Variant report

Variant	rs7620633
Chromosome Location	chr3:159479691-159479692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:159478872-159485842	IMR90	lung:	n/a	n/a
2	SMARCC1	chr3:159479275-159481600	Hela-S3	cervix:	n/a	chr3:159479718-159479727
3	BRCA1	chr3:159479495-159481576	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr3:159479069-159484734	HUVEC	blood vessel:	n/a	n/a
5	FOXA1	chr3:159479052-159479723	T-47D	breast:	n/a	n/a
6	GATA3	chr3:159479067-159479702	T-47D	breast:	n/a	n/a
7	RCOR1	chr3:159479354-159482527	Hela-S3	cervix:	n/a	n/a
8	GATA3	chr3:159478947-159479695	T-47D	breast:	n/a	n/a
9	NFIC	chr3:159479032-159480350	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159379905..159381514-chr3:159477942..159480811,2	MCF-7	breast:

Variant related genes	Relation type
IQCJ-SCHIP1	TF binding region

rs_ID	r²[population]
rs12107732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12108150	1.00[AFR][1000 genomes]

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159450800-159480600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:159472200-159479800	Weak transcription	Right Ventricle	heart
3	chr3:159474400-159479800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:159474400-159479800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:159474400-159480000	Weak transcription	Fetal Intestine Large	intestine
6	chr3:159477000-159480600	Weak transcription	Fetal Brain Male	brain
7	chr3:159477400-159479800	Enhancers	HSMMtube	muscle
8	chr3:159477400-159480200	Enhancers	Fetal Heart	heart
9	chr3:159477600-159480600	Enhancers	Fetal Lung	lung
10	chr3:159478000-159480400	Enhancers	Colon Smooth Muscle	Colon
11	chr3:159478000-159480600	Enhancers	Liver	Liver
12	chr3:159478200-159480000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:159478200-159480600	Enhancers	Fetal Kidney	kidney
14	chr3:159478800-159479800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:159478800-159479800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:159478800-159480000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:159478800-159480000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:159478800-159480200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:159478800-159480200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr3:159478800-159480400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:159478800-159480600	Enhancers	Placenta	Placenta
22	chr3:159478800-159480600	Enhancers	Rectal Smooth Muscle	rectum
23	chr3:159478800-159480800	Flanking Active TSS	A549	lung
24	chr3:159479000-159479800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr3:159479000-159479800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:159479000-159480000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr3:159479000-159480200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:159479000-159480200	Enhancers	Hela-S3	cervix
29	chr3:159479000-159480400	Enhancers	Adipose Nuclei	Adipose
30	chr3:159479000-159480400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
31	chr3:159479000-159480600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:159479000-159480600	Enhancers	Brain Anterior Caudate	brain
33	chr3:159479000-159480600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr3:159479000-159480600	Enhancers	Fetal Stomach	stomach
35	chr3:159479000-159480600	Enhancers	Left Ventricle	heart
36	chr3:159479000-159480600	Enhancers	NHLF	lung
37	chr3:159479200-159479800	Enhancers	Osteobl	bone
38	chr3:159479200-159480000	Enhancers	Right Atrium	heart
39	chr3:159479200-159480000	Enhancers	NH-A	brain
40	chr3:159479200-159480400	Enhancers	H1 Cell Line	embryonic stem cell
41	chr3:159479200-159480600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:159479200-159480600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr3:159479200-159480600	Enhancers	Brain Angular Gyrus	brain
44	chr3:159479200-159480600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr3:159479200-159480600	Enhancers	Brain Hippocampus Middle	brain
46	chr3:159479200-159480800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:159479400-159479800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:159479400-159479800	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr3:159479400-159480000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr3:159479400-159480400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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