Variant report

Variant	rs7620712
Chromosome Location	chr3:155608503-155608504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr3:155608377-155608993	K562	blood:	n/a	n/a
2	NR2F2	chr3:155608503-155608918	K562	blood:	n/a	n/a
3	TAL1	chr3:155608340-155609094	K562	blood:	n/a	n/a
4	JUN	chr3:155608180-155608943	K562	blood:	n/a	n/a
5	TBP	chr3:155608446-155609034	K562	blood:	n/a	n/a
6	POLR2A	chr3:155608413-155609318	K562	blood:	n/a	n/a
7	POLR2A	chr3:155608370-155608926	K562	blood:	n/a	n/a
8	ZMIZ1	chr3:155608495-155609079	K562	blood:	n/a	n/a
9	MAFF	chr3:155608439-155608784	HepG2	liver:	n/a	chr3:155608596-155608614
10	CCNT2	chr3:155608500-155608902	K562	blood:	n/a	n/a
11	FOS	chr3:155608436-155609004	K562	blood:	n/a	n/a
12	TEAD4	chr3:155608342-155609107	K562	blood:	n/a	n/a
13	GATA1	chr3:155607537-155609491	K562	blood:	n/a	n/a
14	MAFK	chr3:155608353-155609093	K562	blood:	n/a	chr3:155608597-155608612
15	HCFC1	chr3:155608339-155608918	K562	blood:	n/a	n/a
16	TBL1XR1	chr3:155608470-155609178	K562	blood:	n/a	n/a
17	PML	chr3:155608409-155609060	K562	blood:	n/a	n/a
18	MAFK	chr3:155608420-155608773	HepG2	liver:	n/a	chr3:155608597-155608612
19	ARID3A	chr3:155608161-155609156	K562	blood:	n/a	n/a
20	RCOR1	chr3:155608407-155609047	K562	blood:	n/a	n/a
21	TBL1XR1	chr3:155608451-155608941	K562	blood:	n/a	n/a
22	EP300	chr3:155608438-155608890	K562	blood:	n/a	n/a
23	BHLHE40	chr3:155608475-155608893	K562	blood:	n/a	n/a
24	MAFF	chr3:155608380-155608882	K562	blood:	n/a	chr3:155608596-155608614
25	GATA1	chr3:155607791-155609956	PBDE	blood:	n/a	chr3:155609825-155609835 chr3:155609826-155609835
26	RCOR1	chr3:155608418-155608996	K562	blood:	n/a	n/a
27	TRIM28	chr3:155608389-155608982	K562	blood:	n/a	n/a
28	CEBPB	chr3:155608343-155609129	K562	blood:	n/a	chr3:155609111-155609124 chr3:155609065-155609076
29	CREB1	chr3:155608425-155609182	K562	blood:	n/a	n/a
30	STAT5A	chr3:155608388-155609010	K562	blood:	n/a	n/a
31	JUND	chr3:155608359-155609173	K562	blood:	n/a	n/a
32	POLR2A	chr3:155608395-155608950	K562	blood:	n/a	n/a
33	IRF1	chr3:155607796-155609037	K562	blood:	n/a	chr3:155607973-155607986
34	EP300	chr3:155608393-155609051	K562	blood:	n/a	n/a
35	ATF1	chr3:155608453-155609002	K562	blood:	n/a	n/a
36	CUX1	chr3:155608343-155609066	K562	blood:	n/a	n/a
37	NFYA	chr3:155608454-155608954	K562	blood:	n/a	chr3:155608814-155608832 chr3:155608787-155608805
38	MAFK	chr3:155608428-155608781	IMR90	lung:	n/a	chr3:155608597-155608612
39	CEBPB	chr3:155608376-155609269	K562	blood:	n/a	chr3:155609111-155609124 chr3:155609065-155609076
40	CEBPD	chr3:155608441-155609045	K562	blood:	n/a	n/a
41	TEAD4	chr3:155608418-155609037	K562	blood:	n/a	n/a
42	GATA2	chr3:155608457-155608990	K562	blood:	n/a	n/a
43	POLR2A	chr3:155608336-155609130	PBDE	blood:	n/a	n/a
44	CBX3	chr3:155608396-155609109	K562	blood:	n/a	n/a
45	MAFK	chr3:155608441-155608771	HepG2	liver:	n/a	chr3:155608597-155608612
46	MAZ	chr3:155608469-155609014	K562	blood:	n/a	n/a
47	IRF1	chr3:155608411-155609191	K562	blood:	n/a	n/a
48	CEBPD	chr3:155608411-155608992	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:155570082..155571972-chr3:155607319..155610205,2	K562	blood:
2	chr3:155587263..155590134-chr3:155606733..155610568,6	K562	blood:
3	chr3:155607463..155609800-chr3:155617244..155619879,2	MCF-7	breast:
4	chr3:155601296..155605428-chr3:155605959..155609229,4	MCF-7	breast:
5	chr3:155601913..155604220-chr3:155605783..155608605,2	MCF-7	breast:
6	chr3:155607817..155611466-chr3:155647833..155650559,3	K562	blood:
7	chr3:155570082..155572220-chr3:155607319..155610126,2	K562	blood:
8	chr3:155607223..155610791-chr3:155611343..155615286,5	K562	blood:

Variant related genes	Relation type
GMPS	TF binding region
ENSG00000169359	Chromatin interaction
ENSG00000163655	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6766660	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155590200-155643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155591000-155611200	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:155591000-155611800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:155591200-155612600	Weak transcription	Primary B cells from cord blood	blood
6	chr3:155591400-155611200	Weak transcription	Fetal Thymus	thymus
7	chr3:155591400-155616200	Weak transcription	NHEK	skin
8	chr3:155592000-155611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:155594200-155622000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:155596800-155611200	Weak transcription	Thymus	Thymus
11	chr3:155598600-155630000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:155598800-155608600	Weak transcription	Dnd41	blood
13	chr3:155599400-155616400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:155599800-155611400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:155599800-155633400	Weak transcription	Right Ventricle	heart
16	chr3:155600000-155611200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr3:155600000-155612000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:155600400-155615400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr3:155600400-155617200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:155603200-155611000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:155603800-155657800	Weak transcription	Esophagus	oesophagus
22	chr3:155604400-155658600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr3:155604800-155609400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:155605000-155632600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:155606400-155610800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:155606600-155609000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:155606800-155609000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr3:155606800-155612000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr3:155607000-155608600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:155607000-155608800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:155607000-155608800	Enhancers	Aorta	Aorta
32	chr3:155607000-155609000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr3:155607000-155609000	Enhancers	HepG2	liver
34	chr3:155607000-155609000	Enhancers	NHDF-Ad	bronchial
35	chr3:155607000-155609800	Enhancers	Ovary	ovary
36	chr3:155607000-155633400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:155607200-155608600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:155607200-155608600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:155607200-155608800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:155607200-155608800	Enhancers	Primary hematopoietic stem cells	blood
41	chr3:155607200-155608800	Enhancers	Fetal Heart	heart
42	chr3:155607200-155609000	Enhancers	Brain Substantia Nigra	brain
43	chr3:155607200-155609000	Enhancers	Fetal Lung	lung
44	chr3:155607200-155609200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr3:155607200-155609200	Enhancers	Muscle Satellite Cultured Cells	--
46	chr3:155607200-155609200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:155607200-155610600	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr3:155607200-155611000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr3:155607200-155611000	Weak transcription	Placenta	Placenta
50	chr3:155607200-155611400	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links