Variant report

Variant	rs7620767
Chromosome Location	chr3:150947937-150947938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10513391	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10935831	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10935832	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10935833	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12636396	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639390	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16863287	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1882013	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34997694	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680256	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680262	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680263	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58139829	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62282985	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7618206	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150928800-150952800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:150928800-150953000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:150938600-150948600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:150941600-150948000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:150942200-150948600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:150943200-150948600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:150944000-150948600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:150944200-150948200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:150945200-150948200	Enhancers	Primary B cells from cord blood	blood
10	chr3:150945200-150948200	Enhancers	Primary B cells from peripheral blood	blood
11	chr3:150946000-150948000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:150946200-150948000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:150946200-150979400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:150946400-150948400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:150946400-150948600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:150946600-150948000	Weak transcription	Fetal Thymus	thymus
17	chr3:150946600-150948000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:150946600-150948200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:150946600-150948200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:150946600-150948600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr3:150946600-150950800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:150946600-150957800	Weak transcription	Gastric	stomach
23	chr3:150946800-150948000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:150946800-150948000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:150946800-150948000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr3:150946800-150948000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:150946800-150948000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:150946800-150948000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:150946800-150948000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:150946800-150948000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:150946800-150948000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:150946800-150948000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:150946800-150948000	Weak transcription	Dnd41	blood
34	chr3:150946800-150948200	Weak transcription	Brain Anterior Caudate	brain
35	chr3:150946800-150948400	Weak transcription	Adipose Nuclei	Adipose
36	chr3:150946800-150948600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:150946800-150948600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr3:150946800-150948600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr3:150946800-150948800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr3:150946800-150951800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:150946800-150956600	Weak transcription	Fetal Lung	lung
42	chr3:150946800-150969200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:150946800-150983600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:150947000-150948000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr3:150947000-150948000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr3:150947000-150948000	Weak transcription	GM12878-XiMat	blood
47	chr3:150947000-150948000	Weak transcription	NHEK	skin
48	chr3:150947000-150948000	Weak transcription	NHLF	lung
49	chr3:150947000-150948200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:150947000-150948200	Weak transcription	Primary T cells from cord blood	blood

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