Variant report

Variant	rs7620845
Chromosome Location	chr3:69250588-69250589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:69248478-69250687	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
FRMD4B	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12494107	0.82[EUR][1000 genomes]
rs13088684	0.84[ASN][1000 genomes]
rs4378970	0.82[EUR][1000 genomes]
rs4566538	0.82[ASN][1000 genomes]
rs4855364	0.87[ASN][1000 genomes]
rs6771291	0.84[ASN][1000 genomes]
rs72930255	0.82[EUR][1000 genomes]
rs7433337	0.85[ASN][1000 genomes]
rs9811034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848667	0.85[ASN][1000 genomes]
rs9863613	0.84[ASN][1000 genomes]
rs9873171	0.91[ASN][1000 genomes]
rs9873461	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398378	chr3:69240573-69271936	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69232000-69275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69242400-69281600	Weak transcription	Brain Germinal Matrix	brain
3	chr3:69242600-69268800	Weak transcription	Spleen	Spleen
4	chr3:69244000-69264800	Weak transcription	Fetal Brain Female	brain
5	chr3:69244200-69261800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:69246200-69266800	Weak transcription	HSMM	muscle
7	chr3:69247000-69254000	Weak transcription	Fetal Brain Male	brain
8	chr3:69247200-69253200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:69248200-69257000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:69249000-69255400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:69249000-69263000	Weak transcription	Lung	lung
12	chr3:69249200-69252600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:69249400-69251200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:69249400-69252600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:69249400-69252600	Weak transcription	Gastric	stomach
16	chr3:69249400-69257600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr3:69249800-69254600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:69249800-69254600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:69250000-69251200	Enhancers	Placenta	Placenta
20	chr3:69250000-69252600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:69250000-69252800	Weak transcription	GM12878-XiMat	blood
22	chr3:69250000-69253600	Weak transcription	HSMMtube	muscle
23	chr3:69250000-69255200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr3:69250000-69258400	Weak transcription	Fetal Thymus	thymus
25	chr3:69250000-69261600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr3:69250000-69263000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr3:69250000-69269200	Weak transcription	Thymus	Thymus
28	chr3:69250000-69272400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:69250000-69281600	Weak transcription	Esophagus	oesophagus
30	chr3:69250200-69250800	Weak transcription	Right Ventricle	heart
31	chr3:69250200-69250800	Weak transcription	Stomach Mucosa	stomach
32	chr3:69250200-69251000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr3:69250200-69251000	Enhancers	Brain Hippocampus Middle	brain
34	chr3:69250200-69251400	Enhancers	Fetal Heart	heart
35	chr3:69250200-69251400	Enhancers	Fetal Intestine Large	intestine
36	chr3:69250200-69252600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr3:69250200-69252600	Weak transcription	Left Ventricle	heart
38	chr3:69250200-69252800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr3:69250200-69253200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:69250200-69253200	Weak transcription	Pancreas	Pancrea
41	chr3:69250200-69253400	Weak transcription	Adipose Nuclei	Adipose
42	chr3:69250200-69254800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr3:69250200-69255400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr3:69250200-69255600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:69250200-69257600	Weak transcription	Fetal Lung	lung
46	chr3:69250200-69262000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr3:69250200-69262800	Weak transcription	Fetal Stomach	stomach
48	chr3:69250200-69263200	Weak transcription	Dnd41	blood
49	chr3:69250200-69268800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr3:69250200-69268800	Weak transcription	Ovary	ovary

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