Variant report

Variant	rs7622142
Chromosome Location	chr3:150040096-150040097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150020231..150040124-chr3:150123959..150134634,58	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17492826	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150033000-150041400	Weak transcription	Placenta	Placenta
2	chr3:150033800-150053000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:150034400-150041600	Weak transcription	Fetal Lung	lung
4	chr3:150035600-150042400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:150037800-150042600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:150037800-150042800	Weak transcription	NHLF	lung
7	chr3:150038200-150041000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:150038200-150041800	Weak transcription	Fetal Intestine Large	intestine
9	chr3:150038200-150042200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:150038200-150045400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:150038400-150041800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:150038400-150047400	Weak transcription	NHEK	skin
13	chr3:150038600-150041800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:150038600-150041800	Weak transcription	Fetal Intestine Small	intestine
15	chr3:150038600-150041800	Weak transcription	A549	lung
16	chr3:150038600-150046400	Weak transcription	HMEC	breast
17	chr3:150038600-150047400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:150039200-150041800	Weak transcription	Stomach Mucosa	stomach
19	chr3:150039400-150042200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:150039800-150041800	Weak transcription	NHDF-Ad	bronchial
21	chr3:150039800-150042400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:150039800-150042600	Weak transcription	Osteobl	bone
23	chr3:150039800-150042800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:150040000-150041600	Weak transcription	Hela-S3	cervix
25	chr3:150040000-150042400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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