Variant report
| Variant | rs7622444 |
|---|---|
| Chromosome Location | chr3:79557927-79557928 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:78719848..78721355-chr3:79557573..79560044,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs13084055 | 1.00[CHB][hapmap] |
| rs6802032 | 0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7429701 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap] |
| rs7637338 | 1.00[CHB][hapmap] |
| rs9809987 | 1.00[ASN][1000 genomes] |
| rs9813399 | 1.00[ASN][1000 genomes] |
| rs9815951 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs9820160 | 0.84[CEU][hapmap] |
| rs9840422 | 1.00[CHD][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834747 | chr3:79441211-79591923 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv3394288 | chr3:79545122-79715746 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionmiRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
