Variant report

Variant	rs7622887
Chromosome Location	chr3:23857322-23857323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23853713..23855687-chr3:23855712..23857598,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1473379	0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs1473380	0.81[CHD][hapmap]
rs6550805	0.87[TSI][hapmap]
rs6767406	0.84[ASW][hapmap];0.91[LWK][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.82[AFR][1000 genomes]
rs6775367	0.81[CEU][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6779573	0.95[JPT][hapmap];0.82[TSI][hapmap]
rs9869299	0.83[JPT][hapmap]
rs9873708	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834637	chr3:23703928-23886144	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7622887	NKIRAS1	cis	parietal	SCAN
rs7622887	NKIRAS1	cis	cerebellum	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23852800-23859600	Weak transcription	Gastric	stomach
2	chr3:23853000-23857400	Weak transcription	Colonic Mucosa	Colon
3	chr3:23853000-23858000	Weak transcription	Lung	lung
4	chr3:23853000-23859000	Weak transcription	Placenta	Placenta
5	chr3:23853000-23860000	Weak transcription	Pancreas	Pancrea
6	chr3:23853000-23860800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:23853000-23861000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:23853000-23861200	Weak transcription	Left Ventricle	heart
9	chr3:23853000-23861400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:23853000-23862400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:23853000-23862600	Weak transcription	Ovary	ovary
12	chr3:23853000-23862800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:23853000-23865800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:23853000-23866200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:23853000-23867200	Weak transcription	Aorta	Aorta
16	chr3:23853000-23867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:23853000-23867800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr3:23853000-23867800	Weak transcription	Esophagus	oesophagus
19	chr3:23853000-23867800	Weak transcription	Fetal Brain Female	brain
20	chr3:23853000-23867800	Weak transcription	Right Atrium	heart
21	chr3:23853000-23868000	Weak transcription	NH-A	brain
22	chr3:23853000-23868400	Weak transcription	HSMMtube	muscle
23	chr3:23853000-23876000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr3:23853000-23876000	Weak transcription	Fetal Stomach	stomach
25	chr3:23853000-23882000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:23853000-23887400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:23853200-23858400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:23853200-23859400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:23853200-23861000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:23853200-23861000	Weak transcription	Brain Germinal Matrix	brain
31	chr3:23853200-23861200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:23853200-23861200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr3:23853200-23893200	Weak transcription	Thymus	Thymus
34	chr3:23853400-23857400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr3:23853400-23859600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:23853400-23864400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr3:23853400-23866000	Weak transcription	HMEC	breast
38	chr3:23853400-23867400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr3:23853400-23885600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:23853600-23861200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr3:23853600-23866000	Weak transcription	Liver	Liver
42	chr3:23853800-23857400	Weak transcription	Adipose Nuclei	Adipose
43	chr3:23853800-23857800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr3:23853800-23858000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr3:23853800-23860800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr3:23853800-23860800	Weak transcription	Primary B cells from cord blood	blood
47	chr3:23853800-23861000	Weak transcription	Brain Anterior Caudate	brain
48	chr3:23853800-23865200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr3:23854000-23857600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr3:23854000-23858400	Strong transcription	A549	lung

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