Variant report

Variant	rs7623171
Chromosome Location	chr3:139966322-139966323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139965802..139967783-chr3:139969852..139972671,2	MCF-7	breast:
2	chr3:139965201..139967010-chr3:139990337..139992942,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7610928	1.00[AMR][1000 genomes]
rs7620671	1.00[AMR][1000 genomes]
rs7625712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7636848	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139958600-139967400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:139962000-139970600	Weak transcription	Ovary	ovary
3	chr3:139962600-139966400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:139963200-139969800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:139963400-139968000	Weak transcription	Right Atrium	heart
6	chr3:139963400-139968600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:139964000-139971600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:139964400-139968600	Weak transcription	Adipose Nuclei	Adipose
9	chr3:139964600-139966600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:139964800-139968600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:139964800-139970400	Weak transcription	HSMM	muscle
12	chr3:139965200-139970600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:139965400-139966800	Weak transcription	HSMMtube	muscle
14	chr3:139965800-139966400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:139965800-139968600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:139965800-139969000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:139965800-139969200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:139966000-139969000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:139966000-139970400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:139966000-139970800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:139966200-139970400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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