Variant report

Variant	rs7623598
Chromosome Location	chr3:115970199-115970200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7609815	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1808373	chr3:115952799-115984473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115961000-115971000	Weak transcription	Brain Anterior Caudate	brain
2	chr3:115962400-115983200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:115965600-115970800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:115965800-115970800	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:115965800-115983200	Weak transcription	Fetal Brain Male	brain
6	chr3:115967000-115972200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:115967400-115970800	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:115968400-115971000	Weak transcription	Fetal Kidney	kidney
9	chr3:115969400-115970200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:115969400-115971200	Enhancers	Rectal Smooth Muscle	rectum
11	chr3:115969800-115970200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:115969800-115970800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:115969800-115971000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:115969800-115971200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:115969800-115971600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:115969800-115972400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:115969800-115972400	Enhancers	Brain Angular Gyrus	brain
18	chr3:115969800-115973000	Enhancers	Brain Substantia Nigra	brain
19	chr3:115970000-115970200	Weak transcription	Fetal Stomach	stomach
20	chr3:115970000-115970600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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