Variant report

Variant	rs7624510
Chromosome Location	chr3:24080930-24080931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6771641	0.83[AMR][1000 genomes]
rs7628593	1.00[AMR][1000 genomes]
rs7638420	0.85[AMR][1000 genomes]
rs7652674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24079400-24081000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:24079400-24081000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:24079400-24084200	Weak transcription	Right Atrium	heart
4	chr3:24079600-24082600	Weak transcription	Psoas Muscle	Psoas
5	chr3:24079600-24082800	Weak transcription	Ovary	ovary
6	chr3:24079600-24084800	Weak transcription	Left Ventricle	heart
7	chr3:24079600-24090400	Weak transcription	Lung	lung
8	chr3:24079800-24088200	Weak transcription	Spleen	Spleen
9	chr3:24080000-24082200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:24080800-24081000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:24080800-24081000	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:24080800-24081000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:24080800-24081000	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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