Variant report

Variant	rs7624578
Chromosome Location	chr3:154949850-154949851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:154945250..154948385-chr3:154948897..154951572,3	MCF-7	breast:
2	chr3:154948903..154951174-chr3:154971402..154973634,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12492413	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1485242	0.81[EUR][1000 genomes]
rs1531943	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1601385	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16824714	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16846961	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2062373	0.85[CHB][hapmap]
rs2217927	0.80[AMR][1000 genomes]
rs28608590	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4680156	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs58524948	0.81[EUR][1000 genomes]
rs58881543	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62277316	0.80[AMR][1000 genomes]
rs6763127	0.85[CHB][hapmap]
rs6777602	0.84[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs6778088	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7432681	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7627042	0.80[AMR][1000 genomes]
rs9850393	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9866346	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv829762	chr3:154879350-155052986	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154947000-154951000	Weak transcription	Fetal Kidney	kidney
2	chr3:154947600-154950000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:154947600-154952200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:154947600-154952200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:154947600-154952400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:154948000-154953200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:154948400-154950600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:154948600-154950000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:154948800-154950200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:154949400-154951000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:154949400-154951800	Enhancers	HSMM	muscle
12	chr3:154949400-154952000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:154949400-154952000	Enhancers	NHDF-Ad	bronchial
14	chr3:154949600-154951400	Enhancers	Fetal Muscle Leg	muscle
15	chr3:154949600-154951400	Enhancers	K562	blood
16	chr3:154949600-154951800	Enhancers	Osteobl	bone
17	chr3:154949600-154952000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:154949800-154950000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:154949800-154950000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr3:154949800-154950200	Enhancers	Psoas Muscle	Psoas
21	chr3:154949800-154950600	Enhancers	Left Ventricle	heart
22	chr3:154949800-154951200	Enhancers	Right Atrium	heart
23	chr3:154949800-154951400	Enhancers	Adipose Nuclei	Adipose
24	chr3:154949800-154951400	Enhancers	Colon Smooth Muscle	Colon
25	chr3:154949800-154951400	Enhancers	Pancreas	Pancrea
26	chr3:154949800-154951600	Enhancers	HMEC	breast
27	chr3:154949800-154951600	Enhancers	HSMMtube	muscle
28	chr3:154949800-154952200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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