Variant report

Variant	rs7624615
Chromosome Location	chr3:102772149-102772150
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28371423	1.00[EUR][1000 genomes]
rs60414141	1.00[EUR][1000 genomes]
rs6806312	1.00[EUR][1000 genomes]
rs9812153	1.00[EUR][1000 genomes]
rs9817385	1.00[EUR][1000 genomes]
rs9882888	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591190	chr3:102345638-102946216	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1000584	chr3:102358773-102923378	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv915978	chr3:102386795-102949530	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv460792	chr3:102467051-103087654	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv591191	chr3:102467051-103087654	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102769800-102773000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:102770600-102772200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:102770800-102772200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:102770800-102772200	Enhancers	Adipose Nuclei	Adipose
5	chr3:102770800-102772200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:102770800-102772600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr3:102771000-102772200	Enhancers	Fetal Intestine Large	intestine
8	chr3:102771000-102772200	Enhancers	Fetal Lung	lung
9	chr3:102771000-102772200	Enhancers	Hela-S3	cervix
10	chr3:102771000-102775600	Enhancers	Fetal Intestine Small	intestine
11	chr3:102771200-102772200	Enhancers	Duodenum Mucosa	Duodenum
12	chr3:102771200-102772200	Enhancers	Small Intestine	intestine
13	chr3:102771400-102772200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:102771400-102772200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr3:102771400-102772200	Enhancers	Fetal Muscle Leg	muscle
16	chr3:102771400-102772200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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