Variant report

Variant	rs7625418
Chromosome Location	chr3:180125750-180125751
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1520606	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2338578	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28595523	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4490359	0.83[EUR][1000 genomes]
rs4615077	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59829320	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62291003	0.81[AMR][1000 genomes]
rs6443696	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6771979	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7611683	0.83[EUR][1000 genomes]
rs7613520	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7624210	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7633440	0.83[EUR][1000 genomes]
rs7643043	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9842781	0.81[EUR][1000 genomes]
rs9857056	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9865427	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180120800-180126400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:180121200-180126200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:180121600-180126400	Weak transcription	NHEK	skin
4	chr3:180122200-180126000	Weak transcription	HMEC	breast
5	chr3:180122400-180126200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:180124600-180126600	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links