Variant report

Variant	rs7625959
Chromosome Location	chr3:42946047-42946048
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10470680	0.89[EUR][1000 genomes]
rs1403525	0.82[TSI][hapmap]
rs17074894	0.91[EUR][1000 genomes]
rs1816227	0.92[EUR][1000 genomes]
rs2288371	1.00[JPT][hapmap]
rs2288372	1.00[JPT][hapmap]
rs2288373	1.00[JPT][hapmap]
rs28378297	0.91[EUR][1000 genomes]
rs3915020	0.88[EUR][1000 genomes]
rs542394	1.00[JPT][hapmap]
rs545023	1.00[JPT][hapmap]
rs551658	0.91[MEX][hapmap];1.00[TSI][hapmap]
rs60616619	0.89[EUR][1000 genomes]
rs61004728	0.89[EUR][1000 genomes]
rs619660	1.00[JPT][hapmap]
rs62248962	0.92[EUR][1000 genomes]
rs62249006	0.89[EUR][1000 genomes]
rs62249007	0.89[EUR][1000 genomes]
rs62249008	0.88[EUR][1000 genomes]
rs62249009	0.89[EUR][1000 genomes]
rs62249011	0.89[EUR][1000 genomes]
rs62249013	0.88[EUR][1000 genomes]
rs62249014	0.83[EUR][1000 genomes]
rs6763762	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs6773223	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs6775999	0.89[EUR][1000 genomes]
rs6782601	0.81[MEX][hapmap]
rs6798412	0.94[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs6798520	0.94[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs7617715	0.93[EUR][1000 genomes]
rs7641452	0.94[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs7644923	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs834579	1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs834584	1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs9311330	0.93[EUR][1000 genomes]
rs9311331	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs9808932	0.91[EUR][1000 genomes]
rs9815609	0.80[CEU][hapmap]
rs9832875	0.85[GIH][hapmap];0.81[MEX][hapmap];0.92[EUR][1000 genomes]
rs9833284	0.89[EUR][1000 genomes]
rs9852930	0.91[EUR][1000 genomes]
rs9858270	0.88[EUR][1000 genomes]
rs9874514	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3783	chr3:42926223-42970597	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42941800-42947400	Weak transcription	Esophagus	oesophagus
2	chr3:42942600-42947600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:42942800-42947000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:42944000-42947000	Weak transcription	Placenta	Placenta
5	chr3:42944000-42947000	Weak transcription	Gastric	stomach
6	chr3:42944000-42947000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:42944400-42946600	Weak transcription	Stomach Mucosa	stomach

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