Variant report

Variant	rs7626939
Chromosome Location	chr3:60872583-60872584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11130796	1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1447928	0.88[YRI][hapmap]
rs4974248	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6446161	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6446162	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6786603	0.90[AFR][1000 genomes]
rs6799687	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs7618397	0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9817302	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9830059	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60871400-60876000	Weak transcription	Pancreas	Pancrea
2	chr3:60871600-60872800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:60871600-60873800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:60871800-60873000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:60872000-60872600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:60872000-60872800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:60872200-60872800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:60872400-60873000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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