Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10212210	0.83[EUR][1000 genomes]
rs11924799	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16831443	0.83[EUR][1000 genomes]
rs16831525	0.83[EUR][1000 genomes]
rs6785971	0.83[EUR][1000 genomes]
rs6786124	0.83[EUR][1000 genomes]
rs73043171	0.83[EUR][1000 genomes]
rs73043708	0.83[EUR][1000 genomes]
rs73063099	0.83[EUR][1000 genomes]
rs7621254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7624515	0.83[EUR][1000 genomes]
rs7624538	0.83[EUR][1000 genomes]
rs7625261	0.83[EUR][1000 genomes]
rs7630834	0.83[EUR][1000 genomes]
rs7636332	0.83[EUR][1000 genomes]
rs7636870	0.83[EUR][1000 genomes]
rs7639201	0.83[EUR][1000 genomes]
rs7653060	0.83[EUR][1000 genomes]
rs9290699	0.83[EUR][1000 genomes]
rs9290700	0.83[EUR][1000 genomes]
rs9290702	0.83[EUR][1000 genomes]
rs9290703	0.83[EUR][1000 genomes]
rs9830219	0.83[EUR][1000 genomes]
rs9838899	0.83[EUR][1000 genomes]
rs9840547	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180101800-180118800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:180106800-180119000	Weak transcription	HMEC	breast

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