Variant report

Variant	rs7627301
Chromosome Location	chr3:119020081-119020082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119016211..119028042-chr3:119037960..119043695,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241155	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11919254	0.97[EUR][1000 genomes]
rs35441453	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6764529	0.86[AFR][1000 genomes]
rs7614346	1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7627485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7643381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119014200-119029800	Weak transcription	Gastric	stomach
2	chr3:119014200-119032800	Weak transcription	Pancreas	Pancrea
3	chr3:119014400-119021600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:119014400-119021800	Weak transcription	Liver	Liver
5	chr3:119015000-119021800	Weak transcription	Fetal Intestine Large	intestine
6	chr3:119015000-119028600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:119015000-119041200	Weak transcription	Aorta	Aorta
8	chr3:119015200-119020600	Weak transcription	Primary B cells from cord blood	blood
9	chr3:119015200-119021600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:119015200-119041000	Weak transcription	Fetal Kidney	kidney
11	chr3:119015800-119024400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:119015800-119024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:119016000-119021800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:119016000-119035400	Weak transcription	Fetal Brain Male	brain
15	chr3:119016000-119041000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr3:119016400-119024000	Weak transcription	Small Intestine	intestine
17	chr3:119016400-119040800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:119016400-119041000	Weak transcription	Fetal Intestine Small	intestine
19	chr3:119016600-119021600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:119016600-119021800	Weak transcription	NHLF	lung
21	chr3:119016600-119024400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:119016600-119025000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:119016800-119024800	Enhancers	Fetal Heart	heart
24	chr3:119017200-119020200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:119017200-119021600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:119017200-119021800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:119017200-119023000	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:119017200-119025000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr3:119017400-119021600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:119017400-119021600	Weak transcription	HSMM	muscle
31	chr3:119017400-119021800	Weak transcription	Ovary	ovary
32	chr3:119017400-119029800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:119017400-119040600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr3:119017600-119020200	Weak transcription	Primary T cells from cord blood	blood
35	chr3:119017600-119020200	Weak transcription	Brain Anterior Caudate	brain
36	chr3:119017600-119020200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr3:119017600-119020600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr3:119017600-119032400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr3:119017800-119020200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr3:119017800-119020200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr3:119017800-119021600	Weak transcription	Fetal Lung	lung
42	chr3:119017800-119022000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr3:119018800-119020600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:119018800-119021200	Enhancers	Right Atrium	heart
45	chr3:119018800-119022600	Genic enhancers	Left Ventricle	heart
46	chr3:119018800-119032800	Weak transcription	Thymus	Thymus
47	chr3:119019000-119021600	Enhancers	Adipose Nuclei	Adipose
48	chr3:119019000-119022600	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr3:119019200-119020400	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr3:119019200-119020600	Enhancers	Spleen	Spleen

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