Variant report

Variant	rs7628851
Chromosome Location	chr3:141658320-141658321
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141629759..141632331-chr3:141657895..141659555,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12636926	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12637444	0.85[ASN][1000 genomes]
rs3762727	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3792409	0.82[ASN][1000 genomes]
rs4683653	0.84[ASN][1000 genomes]
rs6440052	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6765439	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9817526	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9861009	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141621000-141670800	Weak transcription	Small Intestine	intestine
2	chr3:141625600-141668400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:141626600-141659000	Weak transcription	Pancreas	Pancrea
4	chr3:141628200-141673600	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:141628600-141658800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:141628600-141669000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:141628800-141669800	Weak transcription	Fetal Lung	lung
8	chr3:141628800-141674000	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:141629000-141739200	Weak transcription	Psoas Muscle	Psoas
10	chr3:141633000-141659000	Weak transcription	NHLF	lung
11	chr3:141634200-141682000	Weak transcription	Brain Angular Gyrus	brain
12	chr3:141637400-141658800	Weak transcription	Brain Germinal Matrix	brain
13	chr3:141640600-141658800	Weak transcription	Fetal Heart	heart
14	chr3:141640800-141659200	Weak transcription	Colonic Mucosa	Colon
15	chr3:141640800-141659200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:141642800-141658600	Weak transcription	A549	lung
17	chr3:141643000-141675800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:141643400-141671200	Weak transcription	Right Ventricle	heart
19	chr3:141644800-141658600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:141644800-141658600	Weak transcription	NHDF-Ad	bronchial
21	chr3:141644800-141678400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr3:141646800-141659000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:141646800-141668200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr3:141647000-141668400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:141647000-141669200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr3:141647200-141658800	Weak transcription	NH-A	brain
27	chr3:141647200-141659000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:141647200-141669400	Weak transcription	Primary B cells from cord blood	blood
29	chr3:141647400-141658600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr3:141647400-141658800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:141647400-141658800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:141647400-141668200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr3:141647400-141670400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:141647600-141658600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:141647600-141659200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr3:141647600-141670600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:141647800-141659000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr3:141647800-141660800	Weak transcription	Lung	lung
39	chr3:141647800-141664200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:141647800-141668200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:141647800-141670200	Weak transcription	Adipose Nuclei	Adipose
42	chr3:141648000-141658600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:141648000-141658600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:141648000-141660600	Weak transcription	Gastric	stomach
45	chr3:141648000-141664400	Weak transcription	Primary T cells from cord blood	blood
46	chr3:141648000-141670000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:141648000-141670800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr3:141648200-141658600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:141648200-141658600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:141648200-141658600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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