Variant report

Variant	rs762887
Chromosome Location	chr22:33148919-33148920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33144568..33146477-chr22:33146866..33149245,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1018790	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs1018792	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10854629	0.86[CHB][hapmap]
rs11089594	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs130270	0.86[CHB][hapmap]
rs130275	0.80[CEU][hapmap]
rs130287	0.80[CEU][hapmap]
rs130525	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs130530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs130532	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs130533	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs130538	0.94[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs130548	0.81[ASN][1000 genomes]
rs130551	0.81[ASN][1000 genomes]
rs130559	0.94[CEU][hapmap];0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs130560	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs135149	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1962223	0.86[CHB][hapmap]
rs2097326	0.86[CHB][hapmap]
rs2413148	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2413151	0.86[CHB][hapmap]
rs2899194	0.86[CHB][hapmap]
rs4322932	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4635627	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4821094	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4821095	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4821096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4821100	0.86[CHB][hapmap]
rs4821101	0.86[CHB][hapmap]
rs5749504	0.86[CHB][hapmap]
rs5749505	0.80[CHB][hapmap]
rs5754251	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5754253	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs5754258	0.86[CHB][hapmap]
rs5754260	0.86[CHB][hapmap]
rs5754263	0.85[CHB][hapmap]
rs5994618	0.85[ASN][1000 genomes]
rs5994619	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5998616	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5998622	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72487604	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs80269	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs929013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs929014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs929015	0.86[CHB][hapmap]
rs9606991	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9606992	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9606993	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9609622	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9609623	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9609631	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33141600-33150600	Weak transcription	Spleen	Spleen
2	chr22:33142600-33150600	Weak transcription	HMEC	breast
3	chr22:33143000-33149800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr22:33143000-33150400	Weak transcription	Lung	lung
5	chr22:33143000-33150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr22:33143200-33150600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr22:33144000-33149200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr22:33144000-33149200	Weak transcription	Right Atrium	heart
9	chr22:33144000-33150400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr22:33144000-33150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr22:33144800-33150400	Weak transcription	Left Ventricle	heart
12	chr22:33145800-33150400	Enhancers	HepG2	liver
13	chr22:33147800-33150400	Weak transcription	Liver	Liver
14	chr22:33147800-33150400	Weak transcription	Hela-S3	cervix
15	chr22:33148000-33149800	Enhancers	NHDF-Ad	bronchial
16	chr22:33148000-33151200	Enhancers	HSMM	muscle
17	chr22:33148000-33151200	Enhancers	NH-A	brain
18	chr22:33148000-33151200	Enhancers	Osteobl	bone
19	chr22:33148000-33151400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr22:33148200-33149600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr22:33148200-33149800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr22:33148200-33150000	Enhancers	Fetal Stomach	stomach
23	chr22:33148400-33149200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr22:33148400-33149200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr22:33148400-33149400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr22:33148400-33149400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr22:33148400-33149600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr22:33148400-33149800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr22:33148400-33149800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr22:33148400-33151000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr22:33148400-33151200	Enhancers	Fetal Muscle Trunk	muscle
32	chr22:33148600-33149200	Enhancers	Fetal Thymus	thymus
33	chr22:33148600-33149800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr22:33148600-33149800	Enhancers	Right Ventricle	heart
35	chr22:33148600-33150000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr22:33148600-33150000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr22:33148600-33151200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr22:33148600-33151400	Enhancers	Fetal Muscle Leg	muscle
39	chr22:33148600-33151600	Enhancers	Adipose Nuclei	Adipose
40	chr22:33148800-33149200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr22:33148800-33149400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr22:33148800-33149400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr22:33148800-33149600	Enhancers	Placenta	Placenta
44	chr22:33148800-33151200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links