Variant report

Variant	rs76293020
Chromosome Location	chr5:154148705-154148706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154133078..154137845-chr5:154142563..154149366,9	MCF-7	breast:
2	chr5:154141399..154144040-chr5:154148555..154150698,2	MCF-7	breast:
3	chr5:154132476..154143251-chr5:154145354..154162500,38	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830521	chr5:154147567-154244266	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3398099	chr5:154148635-154149085	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154138200-154151400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr5:154138200-154156000	Enhancers	Primary T cells fromperipheralblood	blood
3	chr5:154138800-154150000	Weak transcription	HSMM	muscle
4	chr5:154139000-154149800	Weak transcription	NHLF	lung
5	chr5:154139800-154148800	Weak transcription	Fetal Brain Male	brain
6	chr5:154140200-154149200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:154141000-154150000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr5:154141200-154148800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:154141200-154150600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:154141200-154151000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:154141400-154148800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:154141400-154148800	Weak transcription	Colonic Mucosa	Colon
13	chr5:154141400-154152200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:154142200-154148800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:154142200-154148800	Weak transcription	Aorta	Aorta
16	chr5:154142400-154148800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:154142600-154148800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:154142600-154149000	Weak transcription	Hela-S3	cervix
19	chr5:154142800-154148800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:154143200-154150600	Enhancers	Primary B cells from peripheral blood	blood
21	chr5:154143600-154149200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:154144400-154149000	Enhancers	Fetal Thymus	thymus
23	chr5:154144400-154151800	Genic enhancers	K562	blood
24	chr5:154144600-154150200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr5:154144600-154150800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr5:154144600-154151600	Enhancers	H1 Cell Line	embryonic stem cell
27	chr5:154144600-154151600	Enhancers	Brain Anterior Caudate	brain
28	chr5:154144600-154151600	Enhancers	Left Ventricle	heart
29	chr5:154144600-154157200	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr5:154144800-154150200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr5:154144800-154150400	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr5:154144800-154150800	Enhancers	Primary B cells from cord blood	blood
33	chr5:154145000-154150200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr5:154145000-154150600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:154145400-154151600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr5:154145800-154150800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr5:154146000-154149200	Weak transcription	Fetal Kidney	kidney
38	chr5:154146400-154148800	Weak transcription	HMEC	breast
39	chr5:154146600-154153800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr5:154146800-154149400	Weak transcription	Placenta	Placenta
41	chr5:154147000-154148800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr5:154147000-154148800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr5:154147200-154148800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr5:154147200-154148800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr5:154147200-154148800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr5:154147400-154148800	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr5:154147400-154149400	Weak transcription	Fetal Lung	lung
48	chr5:154147400-154150200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr5:154147400-154161800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr5:154147600-154148800	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links