Variant report

Variant	rs7629423
Chromosome Location	chr3:160324015-160324016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160283211..160285094-chr3:160322353..160324060,2	K562	blood:

Variant related genes	Relation type
ENSG00000229320	Chromatin interaction
ENSG00000186432	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13094009	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1317365	0.89[ASW][hapmap];0.90[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1451761	0.80[JPT][hapmap]
rs1451762	0.80[JPT][hapmap]
rs1451763	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs1882127	0.80[JPT][hapmap]
rs1920642	0.80[JPT][hapmap]
rs1920657	0.92[CEU][hapmap];0.92[MEX][hapmap];0.81[EUR][1000 genomes]
rs1920658	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1920664	0.80[JPT][hapmap]
rs2204817	0.82[EUR][1000 genomes]
rs2279457	0.80[JPT][hapmap]
rs3773372	0.80[JPT][hapmap]
rs3851364	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs4679656	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4679885	0.80[JPT][hapmap]
rs4679899	0.80[JPT][hapmap]
rs4680585	0.80[JPT][hapmap]
rs4680588	0.80[JPT][hapmap]
rs6441319	0.80[JPT][hapmap]
rs6441320	0.80[JPT][hapmap]
rs6441324	0.80[JPT][hapmap]
rs6768975	0.80[JPT][hapmap]
rs721022	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs721023	0.80[JPT][hapmap]
rs7618974	0.80[JPT][hapmap]
rs7621724	0.80[JPT][hapmap]
rs7629	0.80[JPT][hapmap]
rs7634108	0.80[JPT][hapmap]
rs7643779	0.80[JPT][hapmap]
rs7647873	0.80[JPT][hapmap]
rs9845844	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9851063	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9862595	0.80[JPT][hapmap]
rs9968151	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	nsv4089	chr3:160284848-160330024	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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