Variant report

Variant	rs7629544
Chromosome Location	chr3:20886126-20886127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:11966805..11970278-chr3:20885070..20888091,20	K562	blood:
2	chr3:20885773..20889854-chr3:20892035..20895273,4	K562	blood:
3	chr1:11966625..11969718-chr3:20885070..20888090,17	K562	blood:
4	chr1:11967831..11969033-chr3:20886071..20887071,5	HCT-116	colon:
5	chr3:20875856..20878691-chr3:20885550..20887328,2	K562	blood:
6	chr3:20884787..20886669-chr3:20993293..20995378,2	K562	blood:
7	chr3:20884248..20889854-chr3:20892080..20895253,4	K562	blood:
8	chr1:11967944..11968718-chr3:20886090..20887071,3	NB4	blood:
9	chr3:20882801..20884496-chr3:20885503..20888322,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1498992	0.89[EUR][1000 genomes]
rs1499006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35398544	0.89[EUR][1000 genomes]
rs5023501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876598	chr3:20242143-20970042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv999025	chr3:20738244-21042249	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876605	chr3:20798214-20895742	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv834629	chr3:20878902-21057592	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:20883600-20887800	Enhancers	Fetal Lung	lung
2	chr3:20883600-20891600	Weak transcription	Psoas Muscle	Psoas
3	chr3:20885800-20886600	Enhancers	Fetal Stomach	stomach
4	chr3:20886000-20887600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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