Variant report

Variant	rs7629773
Chromosome Location	chr3:150801068-150801069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1220996	0.83[ASW][hapmap];0.85[CEU][hapmap]
rs1221001	0.85[EUR][1000 genomes]
rs1221005	0.85[EUR][1000 genomes]
rs12497969	0.91[ASW][hapmap]
rs12634353	0.89[CEU][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes]
rs1554121	0.91[ASW][hapmap];0.85[CEU][hapmap];0.89[GIH][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap]
rs2048229	0.91[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2567322	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2700471	0.92[ASW][hapmap];0.85[CEU][hapmap];0.90[CHB][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.93[TSI][hapmap]
rs2700473	0.85[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs2700474	0.85[CEU][hapmap];0.90[CHB][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs358970	0.82[AFR][1000 genomes]
rs358971	0.80[ASN][1000 genomes]
rs60312353	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6765711	0.84[ASW][hapmap]
rs7653870	0.81[EUR][1000 genomes]
rs891666	0.83[ASW][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs977423	0.82[EUR][1000 genomes]
rs9942131	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2753152	chr3:150773248-150810545	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150795600-150802800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:150798000-150801400	Weak transcription	Placenta	Placenta
3	chr3:150800000-150801800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:150800000-150802600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:150800200-150801400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:150800200-150801600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:150800200-150801600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr3:150800200-150801600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:150800400-150801200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:150800600-150801400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:150800800-150801200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:150800800-150801400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:150800800-150801400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:150801000-150801400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:150801000-150801600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:150801000-150801600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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