Variant report

Variant	rs7629854
Chromosome Location	chr3:59970170-59970171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58526463	0.82[AFR][1000 genomes]
rs7622382	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv876838	chr3:59952152-59999690	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590388	chr3:59957252-60018326	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59964400-59970600	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr3:59965600-59974600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr3:59967400-59970200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:59967400-59971400	Weak transcription	Thymus	Thymus
5	chr3:59967400-59974400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr3:59967400-59993000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:59968000-59986600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:59968400-59971400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:59968400-59971800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:59968400-59982600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:59969000-59971600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:59969000-59971600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:59969400-59971600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr3:59969600-59970800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:59969800-59970400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:59970000-59971600	ZNF genes & repeats	Fetal Thymus	thymus
17	chr3:59970000-59971800	Genic enhancers	Primary T cells from cord blood	blood
18	chr3:59970000-59972000	ZNF genes & repeats	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links