Variant report

Variant	rs7629966
Chromosome Location	chr3:68879090-68879091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11706249	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11717220	0.81[AMR][1000 genomes]
rs13320444	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13321204	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1354440	0.80[EUR][1000 genomes]
rs1387729	0.81[AMR][1000 genomes]
rs1387730	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1387732	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1387733	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1602197	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1602198	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1602201	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2130437	0.81[EUR][1000 genomes]
rs28475377	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2872443	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28758872	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4632549	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55821251	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56174174	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62254083	0.80[EUR][1000 genomes]
rs62254085	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62254087	0.81[AMR][1000 genomes]
rs62254089	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62254091	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62254119	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797048	0.92[EUR][1000 genomes]
rs7648643	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9310132	0.80[EUR][1000 genomes]
rs9756913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817415	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9817600	0.81[AMR][1000 genomes]
rs9822359	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9824091	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9850052	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9851134	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9851941	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9864085	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867467	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9877022	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882142	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv876930	chr3:68844213-68961010	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv876931	chr3:68858280-68961010	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1014265	chr3:68867645-68921748	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
5	nsv876932	chr3:68868560-68961010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68875400-68882000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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