Variant report

Variant	rs7630840
Chromosome Location	chr3:177618631-177618632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12486411	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13068181	1.00[ASN][1000 genomes]
rs1362826	0.94[ASN][1000 genomes]
rs4349514	0.99[ASN][1000 genomes]
rs4511911	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66539014	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6809579	0.99[ASN][1000 genomes]
rs730046	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177581400-177622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177617000-177621200	Weak transcription	Fetal Kidney	kidney
3	chr3:177617800-177628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:177618000-177622000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:177618000-177622000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:177618000-177622200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:177618000-177622200	Weak transcription	Pancreas	Pancrea
8	chr3:177618400-177621600	Weak transcription	Osteobl	bone
9	chr3:177618400-177622000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:177618600-177621200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:177618600-177621400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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