Variant report

Variant	rs763096
Chromosome Location	chr6:36100669-36100670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36100220..36102559-chr6:36104704..36106593,2	MCF-7	breast:
2	chr6:36099611..36101703-chr6:36163154..36166410,4	K562	blood:
3	chr6:36089580..36092157-chr6:36100589..36102722,2	MCF-7	breast:
4	chr6:36100003..36101717-chr6:36213418..36216121,2	MCF-7	breast:
5	chr6:36097672..36103046-chr6:36163327..36166048,5	MCF-7	breast:
6	chr6:36099568..36102831-chr6:36104693..36107135,4	MCF-7	breast:
7	chr6:36084320..36086467-chr6:36099428..36101090,2	MCF-7	breast:
8	chr6:36098131..36102554-chr6:36163258..36166179,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000096070	Chromatin interaction
ENSG00000246982	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11759995	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17715303	0.81[CEU][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2213661	0.80[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9689522	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9689951	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36097600-36101000	Enhancers	Fetal Heart	heart
2	chr6:36098200-36107000	Weak transcription	HSMMtube	muscle
3	chr6:36098600-36100800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:36098800-36101000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:36099200-36100800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:36099200-36101000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:36099200-36117400	Weak transcription	Psoas Muscle	Psoas
8	chr6:36099400-36101200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:36099600-36100800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:36099600-36100800	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:36099600-36100800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:36099600-36100800	Enhancers	Placenta	Placenta
13	chr6:36099600-36101000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:36099600-36101000	Enhancers	Fetal Muscle Leg	muscle
15	chr6:36099600-36101200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:36099600-36101200	Enhancers	Fetal Muscle Trunk	muscle
17	chr6:36099600-36101200	Enhancers	Fetal Thymus	thymus
18	chr6:36099600-36102000	Enhancers	Fetal Kidney	kidney
19	chr6:36099800-36100800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:36099800-36100800	Enhancers	Esophagus	oesophagus
21	chr6:36099800-36101000	Enhancers	Pancreas	Pancrea
22	chr6:36099800-36101000	Enhancers	Stomach Mucosa	stomach
23	chr6:36099800-36101200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:36099800-36101400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:36099800-36101400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:36099800-36101600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
27	chr6:36099800-36101600	Enhancers	NHEK	skin
28	chr6:36099800-36104200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr6:36099800-36104400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:36099800-36107400	Weak transcription	Fetal Brain Male	brain
31	chr6:36099800-36107400	Weak transcription	Fetal Brain Female	brain
32	chr6:36099800-36107600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:36099800-36113400	Weak transcription	Right Atrium	heart
34	chr6:36100000-36100800	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
35	chr6:36100000-36101200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:36100000-36101400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:36100000-36101400	Enhancers	Brain Cingulate Gyrus	brain
38	chr6:36100000-36101600	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr6:36100000-36102600	Weak transcription	HMEC	breast
40	chr6:36100000-36103000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:36100000-36104400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:36100000-36109600	Weak transcription	Brain Anterior Caudate	brain
43	chr6:36100200-36100800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:36100200-36100800	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr6:36100200-36100800	Enhancers	Primary T cells from cord blood	blood
46	chr6:36100200-36101000	Genic enhancers	Primary B cells from cord blood	blood
47	chr6:36100200-36101000	Genic enhancers	Fetal Stomach	stomach
48	chr6:36100200-36101200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:36100200-36101200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:36100200-36101400	Genic enhancers	Primary T cells fromperipheralblood	blood

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