Variant report

Variant	rs763097
Chromosome Location	chr6:36093330-36093331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36092958..36095297-chr6:36409060..36410982,2	K562	blood:
2	chr6:36090994..36093354-chr6:36216938..36218500,2	MCF-7	breast:
3	chr6:36092302..36094239-chr6:36097450..36098967,2	MCF-7	breast:
4	chr6:36091757..36095454-chr6:36110489..36112652,3	K562	blood:
5	chr6:36090539..36094431-chr6:36162629..36165552,3	K562	blood:
6	chr6:36092457..36094743-chr6:36561123..36563596,2	MCF-7	breast:
7	chr6:36083240..36096353-chr6:36161490..36168411,30	MCF-7	breast:
8	chr6:36093292..36096677-chr6:36162699..36165787,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000246982	Chromatin interaction
ENSG00000156711	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000096070	Chromatin interaction
ENSG00000112078	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11758277	0.97[ASN][1000 genomes]
rs6922865	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs763097	MAPK14	Cis_1M	lymphoblastoid	RTeQTL
rs763097	SLC26A8	cis	Thyroid	GTEx

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36077200-36094800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:36077200-36096600	Weak transcription	Fetal Brain Female	brain
3	chr6:36077400-36094800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:36077400-36096400	Weak transcription	Fetal Brain Male	brain
5	chr6:36079600-36094400	Weak transcription	Hela-S3	cervix
6	chr6:36084600-36097600	Weak transcription	Fetal Heart	heart
7	chr6:36085400-36094600	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:36086600-36098000	Weak transcription	Aorta	Aorta
9	chr6:36088800-36096800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:36089000-36097800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:36089200-36097600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:36089400-36094400	Weak transcription	Osteobl	bone
13	chr6:36089400-36094600	Weak transcription	A549	lung
14	chr6:36089400-36094600	Weak transcription	HMEC	breast
15	chr6:36089400-36094600	Weak transcription	HSMM	muscle
16	chr6:36089400-36094800	Weak transcription	NH-A	brain
17	chr6:36089400-36095000	Enhancers	Primary T cells from cord blood	blood
18	chr6:36089400-36095000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:36089400-36095000	Enhancers	Fetal Thymus	thymus
20	chr6:36089400-36095800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:36089400-36096200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:36089400-36097800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:36089600-36094000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:36089600-36094600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:36089600-36094600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:36089600-36094800	Weak transcription	NHEK	skin
27	chr6:36089600-36095000	Weak transcription	Small Intestine	intestine
28	chr6:36089600-36097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:36090600-36094800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:36090800-36094800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:36090800-36094800	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr6:36091400-36094400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:36091600-36095400	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr6:36091800-36093800	Weak transcription	HUVEC	blood vessel
35	chr6:36091800-36093800	Weak transcription	NHDF-Ad	bronchial
36	chr6:36091800-36094000	Weak transcription	NHLF	lung
37	chr6:36091800-36094400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:36091800-36095000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:36091800-36096200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr6:36091800-36096800	Weak transcription	GM12878-XiMat	blood
41	chr6:36091800-36097800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr6:36091800-36097800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:36091800-36097800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:36091800-36097800	Weak transcription	Right Atrium	heart
45	chr6:36091800-36098000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:36092200-36094400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:36092200-36094400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:36092200-36094400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:36092200-36094400	Weak transcription	Fetal Intestine Small	intestine
50	chr6:36092200-36097600	Weak transcription	Pancreas	Pancrea

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