Variant report

Variant	rs7631719
Chromosome Location	chr3:69118107-69118108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:69117703..69119694-chr3:69127250..69129349,2	MCF-7	breast:
2	chr3:69117879..69121046-chr3:69124484..69126126,3	MCF-7	breast:
3	chr3:69114176..69116001-chr3:69116109..69118445,2	K562	blood:
4	chr3:69117327..69121246-chr3:69122493..69127551,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12630479	0.90[ASN][1000 genomes]
rs12632068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12632476	0.93[ASN][1000 genomes]
rs1866263	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35171227	0.90[EUR][1000 genomes]
rs9812253	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9851078	0.91[GIH][hapmap];0.93[TSI][hapmap]
rs9855731	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv876934	chr3:69111512-69166895	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69101400-69127000	Weak transcription	Small Intestine	intestine
2	chr3:69101800-69128400	Weak transcription	Aorta	Aorta
3	chr3:69102000-69128200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:69102000-69128400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:69102200-69127200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:69108400-69128200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:69108600-69121600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr3:69108600-69121600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr3:69109200-69121600	Weak transcription	Fetal Brain Male	brain
10	chr3:69110200-69127000	Weak transcription	Hela-S3	cervix
11	chr3:69110400-69120000	Weak transcription	HepG2	liver
12	chr3:69110400-69122000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:69110600-69127000	Weak transcription	Brain Angular Gyrus	brain
14	chr3:69110600-69127600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:69110600-69128200	Weak transcription	Right Ventricle	heart
16	chr3:69110600-69128400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:69110600-69128400	Weak transcription	Gastric	stomach
18	chr3:69110600-69128400	Weak transcription	Psoas Muscle	Psoas
19	chr3:69110800-69119800	Weak transcription	Ovary	ovary
20	chr3:69110800-69127000	Weak transcription	Pancreas	Pancrea
21	chr3:69110800-69127600	Weak transcription	Brain Substantia Nigra	brain
22	chr3:69110800-69127800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:69110800-69128600	Weak transcription	Esophagus	oesophagus
24	chr3:69110800-69128800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:69110800-69128800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:69111000-69118400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:69111000-69119800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:69111000-69128600	Weak transcription	Lung	lung
29	chr3:69111000-69128800	Weak transcription	Spleen	Spleen
30	chr3:69111200-69121800	Weak transcription	Brain Anterior Caudate	brain
31	chr3:69111200-69128000	Weak transcription	K562	blood
32	chr3:69111200-69128200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr3:69111200-69128200	Weak transcription	Colonic Mucosa	Colon
34	chr3:69111400-69121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:69111400-69121800	Weak transcription	Fetal Heart	heart
36	chr3:69111400-69122200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:69111400-69127000	Weak transcription	Colon Smooth Muscle	Colon
38	chr3:69111400-69128400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr3:69111600-69119800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr3:69111600-69121600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:69111600-69121800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:69111600-69128200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr3:69111800-69126800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:69111800-69128200	Weak transcription	A549	lung
45	chr3:69112200-69121800	Weak transcription	Brain Hippocampus Middle	brain
46	chr3:69112200-69122400	Weak transcription	HMEC	breast
47	chr3:69112200-69128200	Weak transcription	Fetal Kidney	kidney
48	chr3:69112400-69119600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:69112600-69119000	Weak transcription	Adipose Nuclei	Adipose
50	chr3:69112600-69119600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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