Variant report

Variant	rs7633365
Chromosome Location	chr3:156330873-156330874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156328347..156331199-chr3:156391239..156393640,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11718663	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12696038	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12696039	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13063385	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13063568	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13063746	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13092740	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13096478	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13314546	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13317303	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13322475	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401379	0.81[AMR][1000 genomes]
rs1510274	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16826570	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16826572	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17367831	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1983205	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1995875	0.82[ASN][1000 genomes]
rs2320894	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2320895	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34016978	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34581312	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34667319	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35907778	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62285116	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6441080	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6441081	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6650896	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6808027	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310482	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7610493	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615297	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7615384	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7618375	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7620297	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7640295	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7640363	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7652356	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs874641	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs874642	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs874662	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs874663	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9289970	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs931989	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9631440	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812232	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9826775	0.81[AMR][1000 genomes]
rs9831507	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9832367	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9840361	0.82[ASN][1000 genomes]
rs9840524	0.82[ASN][1000 genomes]
rs9840533	0.82[ASN][1000 genomes]
rs9843340	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869703	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870053	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9870256	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9870575	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9882596	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877684	chr3:156294987-156344825	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7633365	TIPARP-AS1	cis	Artery Tibial	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156324200-156332000	Weak transcription	HMEC	breast
2	chr3:156324400-156332000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:156324400-156332000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:156324400-156332800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:156325000-156332200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:156326800-156332000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:156327200-156332000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:156327200-156332200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:156327400-156332000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:156328000-156332600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:156328200-156332000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:156328200-156332000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:156328200-156332200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:156328200-156332600	Weak transcription	GM12878-XiMat	blood
15	chr3:156328200-156332800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:156328200-156332800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:156328200-156335400	Weak transcription	K562	blood
18	chr3:156330400-156337800	Weak transcription	Fetal Intestine Small	intestine

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