Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11128070	0.83[AMR][1000 genomes]
rs12494816	0.83[AMR][1000 genomes]
rs6551398	0.83[AMR][1000 genomes]
rs6551399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551408	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6767230	0.83[AMR][1000 genomes]
rs6790662	0.83[AMR][1000 genomes]
rs6793981	0.83[AMR][1000 genomes]
rs6800287	0.83[AMR][1000 genomes]
rs6807840	0.83[AMR][1000 genomes]
rs7426466	0.83[AMR][1000 genomes]
rs7632543	0.83[AMR][1000 genomes]
rs7640398	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7652840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310108	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9810701	0.83[AMR][1000 genomes]
rs9811026	0.83[AMR][1000 genomes]
rs9814718	0.83[AMR][1000 genomes]
rs9828822	0.83[AMR][1000 genomes]
rs9829805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9839955	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9859735	0.83[AMR][1000 genomes]
rs9861649	0.83[AMR][1000 genomes]
rs9868041	0.83[AMR][1000 genomes]
rs9883722	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877159	chr3:89018866-89207222	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998460	chr3:89064073-89188335	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536638	chr3:89064073-89188335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89165000-89173200	Weak transcription	Fetal Brain Female	brain
2	chr3:89167000-89176200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:89168800-89171200	Enhancers	Fetal Lung	lung
4	chr3:89169000-89170200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:89169000-89173600	Weak transcription	Fetal Brain Male	brain
6	chr3:89169600-89171600	Weak transcription	Brain Germinal Matrix	brain
7	chr3:89170000-89170200	Enhancers	Brain Substantia Nigra	brain

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