Variant report

Variant	rs7636370
Chromosome Location	chr3:61139645-61139646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10866044	0.95[CEU][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11130818	0.91[CEU][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes]
rs11130819	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11711938	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs11716189	0.96[EUR][1000 genomes]
rs11720347	0.87[CEU][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs11917930	0.82[ASW][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11927024	0.82[ASW][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11927051	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11929245	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12494269	0.96[EUR][1000 genomes]
rs12629280	0.93[ASN][1000 genomes]
rs13323559	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17064608	1.00[YRI][hapmap]
rs1967348	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2218088	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs28735912	0.96[EUR][1000 genomes]
rs2886260	0.96[EUR][1000 genomes]
rs4688292	0.96[EUR][1000 genomes]
rs4688333	0.85[ASN][1000 genomes]
rs4688338	0.87[ASN][1000 genomes]
rs59883301	0.80[AFR][1000 genomes]
rs62268811	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7617424	1.00[YRI][hapmap]
rs9812158	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs9820155	0.89[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9820332	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9823902	0.94[ASN][1000 genomes]
rs9831393	1.00[YRI][hapmap]
rs9841468	0.94[ASN][1000 genomes]
rs9864918	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9870560	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9871498	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9875228	0.82[ASW][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9875365	0.82[ASW][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9875504	0.95[CEU][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9875844	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9876185	0.95[CEU][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9879191	0.94[ASN][1000 genomes]
rs9879848	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9881340	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917837	0.90[CEU][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv948633	chr3:60993915-61171279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv834710	chr3:60995631-61148157	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2757873	chr3:61019003-61185558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv876866	chr3:61054494-61310328	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1000378	chr3:61103229-61238089	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv590425	chr3:61132698-61186550	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1012435	chr3:61136874-61181318	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1014142	chr3:61136874-61184782	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv10276	chr3:61139214-61142011	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61138400-61143800	Weak transcription	Primary T cells from cord blood	blood
2	chr3:61138800-61140600	Weak transcription	Right Atrium	heart
3	chr3:61139400-61141600	Enhancers	Brain Germinal Matrix	brain

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