Variant report

Variant	rs7636594
Chromosome Location	chr3:56090387-56090388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12637898	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1401406	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6445765	0.87[ASN][1000 genomes]
rs6772984	0.86[EUR][1000 genomes]
rs6803094	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9818750	0.83[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs9819904	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56086200-56090400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:56086200-56090400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:56086400-56090400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:56089800-56090800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:56090200-56094000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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