Variant report

Variant	rs7637037
Chromosome Location	chr3:120456332-120456333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:120456023..120459127-chr3:120459888..120461949,3	MCF-7	breast:
2	chr3:120456048..120458212-chr3:120459469..120461688,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144840	Chromatin interaction
ENSG00000153767	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11708525	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11708642	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11712360	0.96[ASN][1000 genomes]
rs11713594	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11714216	0.87[ASN][1000 genomes]
rs11718363	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11719207	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719896	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11720353	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11720614	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17183618	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17184204	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17243218	0.96[ASN][1000 genomes]
rs17243933	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2059331	0.81[ASN][1000 genomes]
rs2229308	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2292170	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2877413	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34319994	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34565470	0.87[ASN][1000 genomes]
rs41365345	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55663109	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55697401	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55869122	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56140323	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6438590	0.87[ASN][1000 genomes]
rs6769985	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779005	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73183728	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73183730	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7647895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv829699	chr3:120308332-120484695	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv877378	chr3:120381530-120606438	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120402800-120456600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:120416400-120460600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:120416800-120460600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:120417600-120456600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:120423000-120460200	Weak transcription	HUVEC	blood vessel
6	chr3:120425000-120456600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:120438400-120457600	Weak transcription	Fetal Lung	lung
8	chr3:120438400-120460200	Weak transcription	NHEK	skin
9	chr3:120438400-120460600	Weak transcription	Brain Anterior Caudate	brain
10	chr3:120438400-120460600	Weak transcription	Right Ventricle	heart
11	chr3:120438600-120456400	Weak transcription	Left Ventricle	heart
12	chr3:120438600-120456600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:120438600-120457000	Weak transcription	Spleen	Spleen
14	chr3:120438600-120457200	Weak transcription	Pancreas	Pancrea
15	chr3:120438600-120460000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:120438600-120460400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:120439000-120456400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:120439000-120456600	Weak transcription	Lung	lung
19	chr3:120439000-120457000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:120439000-120460200	Weak transcription	Primary B cells from cord blood	blood
21	chr3:120439200-120460200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:120439800-120460200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr3:120441200-120456600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr3:120441200-120456600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:120441400-120460000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr3:120441600-120456600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr3:120441600-120457000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr3:120442600-120460400	Weak transcription	Brain Substantia Nigra	brain
29	chr3:120443800-120460200	Weak transcription	HSMM	muscle
30	chr3:120445000-120460600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr3:120446000-120456600	Weak transcription	A549	lung
32	chr3:120446800-120460400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr3:120447000-120456600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr3:120447000-120456600	Weak transcription	Fetal Thymus	thymus
35	chr3:120447200-120460200	Weak transcription	Brain Angular Gyrus	brain
36	chr3:120447200-120460600	Weak transcription	Fetal Heart	heart
37	chr3:120447400-120456400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr3:120447600-120456800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:120447600-120460200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr3:120447600-120460200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:120447800-120456400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:120448200-120460200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:120448200-120460200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:120448200-120460200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr3:120448200-120460200	Weak transcription	Colon Smooth Muscle	Colon
46	chr3:120448400-120456600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr3:120448400-120460200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:120449600-120457400	Weak transcription	Osteobl	bone
49	chr3:120449800-120460200	Weak transcription	Adipose Nuclei	Adipose
50	chr3:120450000-120456800	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links