Variant report

Variant	rs7637082
Chromosome Location	chr3:53099661-53099662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53099455..53102184-chr3:53105815..53107465,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11130332	0.81[EUR][1000 genomes]
rs11707576	0.81[EUR][1000 genomes]
rs11708223	0.80[EUR][1000 genomes]
rs17304995	0.90[EUR][1000 genomes]
rs2564947	0.83[EUR][1000 genomes]
rs2581779	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2581780	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2581796	0.82[EUR][1000 genomes]
rs2581797	0.81[EUR][1000 genomes]
rs2581801	0.81[EUR][1000 genomes]
rs2581802	0.81[EUR][1000 genomes]
rs2581805	0.80[EUR][1000 genomes]
rs2581815	0.81[EUR][1000 genomes]
rs2581820	0.83[EUR][1000 genomes]
rs2581823	0.82[EUR][1000 genomes]
rs2710345	0.81[EUR][1000 genomes]
rs34230854	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4519686	0.82[EUR][1000 genomes]
rs4687692	0.83[EUR][1000 genomes]
rs4687699	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59989280	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6445550	0.81[EUR][1000 genomes]
rs6768844	0.82[EUR][1000 genomes]
rs6770957	0.83[EUR][1000 genomes]
rs6771610	0.84[EUR][1000 genomes]
rs6789219	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6792578	0.82[EUR][1000 genomes]
rs6805298	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71301803	0.90[EUR][1000 genomes]
rs71301807	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7621939	0.81[EUR][1000 genomes]
rs7644973	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7652131	0.83[EUR][1000 genomes]
rs9812543	0.83[EUR][1000 genomes]
rs9831409	0.81[EUR][1000 genomes]
rs9842974	0.82[EUR][1000 genomes]
rs9846976	0.82[EUR][1000 genomes]
rs9870240	0.83[ASN][1000 genomes]
rs9870898	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876800	chr3:53038786-53113762	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7637082	ITIH4-AS1	cis	lung	GTEx
rs7637082	ITIH4	Cis_1M	lymphoblastoid	RTeQTL
rs7637082	ITIH4-AS1	cis	Artery Tibial	GTEx
rs7637082	SERBP1P3	cis	lung	GTEx
rs7637082	MUSTN1	cis	Artery Aorta	GTEx
rs7637082	ITIH4-AS1	cis	Artery Aorta	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53098400-53106000	Weak transcription	Spleen	Spleen
2	chr3:53099600-53101800	Weak transcription	Fetal Intestine Small	intestine

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