Variant report

Variant	rs7637165
Chromosome Location	chr3:120456633-120456634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:120456023..120459127-chr3:120459888..120461949,3	MCF-7	breast:
2	chr3:120456048..120458212-chr3:120459469..120461688,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153767	Chromatin interaction
ENSG00000144840	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6782272	1.00[AFR][1000 genomes]
rs6784793	1.00[AFR][1000 genomes]
rs6808960	1.00[AFR][1000 genomes]
rs6809677	1.00[AFR][1000 genomes]
rs7650069	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv829699	chr3:120308332-120484695	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
4	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv877378	chr3:120381530-120606438	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120416400-120460600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:120416800-120460600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:120423000-120460200	Weak transcription	HUVEC	blood vessel
4	chr3:120438400-120457600	Weak transcription	Fetal Lung	lung
5	chr3:120438400-120460200	Weak transcription	NHEK	skin
6	chr3:120438400-120460600	Weak transcription	Brain Anterior Caudate	brain
7	chr3:120438400-120460600	Weak transcription	Right Ventricle	heart
8	chr3:120438600-120457000	Weak transcription	Spleen	Spleen
9	chr3:120438600-120457200	Weak transcription	Pancreas	Pancrea
10	chr3:120438600-120460000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:120438600-120460400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:120439000-120457000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:120439000-120460200	Weak transcription	Primary B cells from cord blood	blood
14	chr3:120439200-120460200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:120439800-120460200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:120441400-120460000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:120441600-120457000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr3:120442600-120460400	Weak transcription	Brain Substantia Nigra	brain
19	chr3:120443800-120460200	Weak transcription	HSMM	muscle
20	chr3:120445000-120460600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:120446800-120460400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:120447200-120460200	Weak transcription	Brain Angular Gyrus	brain
23	chr3:120447200-120460600	Weak transcription	Fetal Heart	heart
24	chr3:120447600-120456800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:120447600-120460200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:120447600-120460200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:120448200-120460200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:120448200-120460200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:120448200-120460200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr3:120448200-120460200	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:120448400-120460200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:120449600-120457400	Weak transcription	Osteobl	bone
33	chr3:120449800-120460200	Weak transcription	Adipose Nuclei	Adipose
34	chr3:120450000-120456800	Weak transcription	Placenta	Placenta
35	chr3:120450600-120460200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:120455000-120459600	Weak transcription	Dnd41	blood
37	chr3:120455000-120460400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr3:120455200-120460600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr3:120455800-120457600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
40	chr3:120455800-120458200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:120456000-120456800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:120456000-120457400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
43	chr3:120456000-120457400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:120456000-120457400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr3:120456000-120457600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr3:120456000-120457600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:120456000-120458000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
48	chr3:120456200-120456800	Weak transcription	Aorta	Aorta
49	chr3:120456200-120457400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:120456200-120457400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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