Variant report

Variant	rs7637206
Chromosome Location	chr3:113276732-113276733
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113276000..113278801-chr3:113288108..113290527,2	MCF-7	breast:
2	chr3:113269071..113270721-chr3:113276084..113277953,2	MCF-7	breast:
3	chr3:113274620..113277529-chr3:113285320..113288122,4	MCF-7	breast:
4	chr3:113219180..113221575-chr3:113276226..113279044,2	MCF-7	breast:
5	chr3:113254658..113255498-chr3:113275897..113276863,4	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10934233	0.82[EUR][1000 genomes]
rs10934234	0.82[EUR][1000 genomes]
rs12631929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12632492	0.82[EUR][1000 genomes]
rs1567779	0.82[EUR][1000 genomes]
rs2048624	0.80[EUR][1000 genomes]
rs2271492	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2271493	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2271495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2292510	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2292511	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2306069	0.82[EUR][1000 genomes]
rs2399481	0.82[EUR][1000 genomes]
rs28446408	0.82[EUR][1000 genomes]
rs28530478	0.81[EUR][1000 genomes]
rs28564696	0.82[EUR][1000 genomes]
rs3821682	0.80[EUR][1000 genomes]
rs3821683	0.80[EUR][1000 genomes]
rs3896909	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41271363	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4682496	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4682497	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55941419	0.82[EUR][1000 genomes]
rs56721892	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62265514	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62265515	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62265518	0.82[EUR][1000 genomes]
rs62265520	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62265521	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72950888	0.82[EUR][1000 genomes]
rs9816095	0.81[EUR][1000 genomes]
rs9823358	0.81[EUR][1000 genomes]
rs9844542	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9874993	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9879239	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113255400-113278800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:113255600-113278400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:113256000-113279000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:113257200-113277400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:113257200-113283400	Weak transcription	Primary B cells from cord blood	blood
6	chr3:113262600-113278800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:113267400-113278400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:113268200-113279400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:113271000-113277600	Enhancers	HepG2	liver
10	chr3:113274000-113278200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr3:113274400-113278800	Weak transcription	Primary T cells from cord blood	blood
12	chr3:113275200-113277000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:113275200-113277000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:113275200-113277000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:113275200-113277000	Enhancers	HMEC	breast
16	chr3:113275800-113276800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:113275800-113276800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:113276000-113276800	Enhancers	Hela-S3	cervix
19	chr3:113276000-113276800	Enhancers	HUVEC	blood vessel
20	chr3:113276000-113277600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr3:113276000-113277600	Flanking Active TSS	A549	lung
22	chr3:113276200-113276800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr3:113276200-113276800	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr3:113276200-113276800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr3:113276200-113276800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr3:113276200-113277000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr3:113276200-113277000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:113276200-113277600	Genic enhancers	GM12878-XiMat	blood
29	chr3:113276200-113278400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:113276200-113281400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr3:113276400-113276800	Enhancers	Gastric	stomach
32	chr3:113276400-113276800	Enhancers	NH-A	brain
33	chr3:113276400-113277000	Enhancers	Duodenum Mucosa	Duodenum
34	chr3:113276400-113277000	Enhancers	NHEK	skin
35	chr3:113276400-113278000	Enhancers	Stomach Mucosa	stomach
36	chr3:113276400-113281000	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr3:113276600-113277000	Strong transcription	Primary B cells from peripheral blood	blood
38	chr3:113276600-113277000	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr3:113276600-113277600	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr3:113276600-113279000	Weak transcription	Spleen	Spleen

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