Variant report

Variant	rs7637431
Chromosome Location	chr3:88218787-88218788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:88214703..88217502-chr3:88217725..88219491,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6419866	0.89[EUR][1000 genomes]
rs6551279	0.80[EUR][1000 genomes]
rs7620130	0.82[EUR][1000 genomes]
rs9815738	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7637431	CGGBP1///LOC728397	Cis_1M	lymphoblastoid	RTeQTL
rs7637431	C3orf38	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88200800-88221600	Weak transcription	Psoas Muscle	Psoas
2	chr3:88200800-88224400	Weak transcription	Aorta	Aorta
3	chr3:88205600-88222000	Weak transcription	Fetal Stomach	stomach
4	chr3:88205600-88222800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:88205800-88220200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:88205800-88227000	Weak transcription	Lung	lung
7	chr3:88205800-88232400	Weak transcription	Left Ventricle	heart
8	chr3:88206000-88226800	Weak transcription	Ovary	ovary
9	chr3:88206000-88229800	Weak transcription	Thymus	Thymus
10	chr3:88206200-88221200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:88206200-88221800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:88206800-88223400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:88207400-88222200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:88208000-88218800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:88208200-88220400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:88208200-88224600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:88208200-88226600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:88208400-88220400	Weak transcription	Brain Germinal Matrix	brain
19	chr3:88209200-88226400	Weak transcription	Primary B cells from cord blood	blood
20	chr3:88209200-88227800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:88210000-88221800	Weak transcription	Liver	Liver
22	chr3:88211000-88223800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:88212000-88221400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:88212200-88222800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:88212600-88219800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:88214800-88221200	Weak transcription	Brain Hippocampus Middle	brain
27	chr3:88215400-88227000	Weak transcription	HSMM	muscle
28	chr3:88215600-88219400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:88215800-88220000	Weak transcription	Primary T cells from cord blood	blood
30	chr3:88216200-88222000	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links