Variant report

Variant	rs7637567
Chromosome Location	chr3:151190481-151190482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151189546..151191159-chr3:151195430..151197288,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10935854	0.85[CEU][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap]
rs12485986	0.93[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs4234328	0.97[ASN][1000 genomes]
rs4234329	0.97[ASN][1000 genomes]
rs4266168	0.97[ASN][1000 genomes]
rs4339091	0.97[ASN][1000 genomes]
rs4532110	0.97[ASN][1000 genomes]
rs4541381	0.93[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs4550807	0.97[ASN][1000 genomes]
rs4596123	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4605516	0.97[ASN][1000 genomes]
rs4679835	0.93[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4679847	0.97[ASN][1000 genomes]
rs4680484	0.97[ASN][1000 genomes]
rs6440749	0.85[CEU][hapmap];0.83[JPT][hapmap]
rs6440757	0.97[ASN][1000 genomes]
rs6773513	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs6786901	0.97[ASN][1000 genomes]
rs7615314	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7622835	0.97[ASN][1000 genomes]
rs7629176	0.97[ASN][1000 genomes]
rs7637276	0.94[ASN][1000 genomes]
rs9289848	0.97[ASN][1000 genomes]
rs9811627	0.97[ASN][1000 genomes]
rs9816549	0.97[ASN][1000 genomes]
rs9821181	0.94[ASN][1000 genomes]
rs9825219	0.97[ASN][1000 genomes]
rs9829893	0.97[ASN][1000 genomes]
rs9877416	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9880648	0.97[ASN][1000 genomes]
rs9882955	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv877649	chr3:151147968-151236562	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7637567	GPR149	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151179200-151194200	Weak transcription	Ovary	ovary
2	chr3:151188600-151194000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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