Variant report

Variant	rs7637832
Chromosome Location	chr3:134143890-134143891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2400271	0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60881442	0.89[AFR][1000 genomes]
rs6439479	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs72970240	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1007607	chr3:134131521-134156814	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	n/a
5	nsv527126	chr3:134142093-134143919	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134126400-134146000	Weak transcription	Pancreas	Pancrea
2	chr3:134141200-134146000	Weak transcription	Adipose Nuclei	Adipose
3	chr3:134141600-134145800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:134141800-134144000	Enhancers	HepG2	liver
5	chr3:134142000-134148800	Weak transcription	Spleen	Spleen
6	chr3:134142400-134145400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:134142400-134145400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:134142400-134145400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:134142400-134147600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:134142600-134145200	Weak transcription	HSMM	muscle
11	chr3:134142600-134145200	Weak transcription	NHDF-Ad	bronchial
12	chr3:134142800-134145000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:134143200-134144600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:134143200-134145000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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