Variant report

Variant	rs7638914
Chromosome Location	chr3:52628626-52628627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17052329	1.00[ASW][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs55971019	1.00[AMR][1000 genomes]
rs56898787	1.00[AMR][1000 genomes]
rs56961704	1.00[AMR][1000 genomes]
rs60499166	1.00[AMR][1000 genomes]
rs60997031	1.00[AMR][1000 genomes]
rs61734628	1.00[AMR][1000 genomes]
rs6766038	1.00[AMR][1000 genomes]
rs73837599	1.00[AMR][1000 genomes]
rs73839116	1.00[AMR][1000 genomes]
rs73839117	1.00[AMR][1000 genomes]
rs7641255	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52572400-52633000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:52587200-52719200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:52591000-52688000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:52592200-52719200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:52595200-52631000	Weak transcription	Stomach Mucosa	stomach
6	chr3:52612000-52634800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:52612800-52634800	Weak transcription	A549	lung
8	chr3:52613200-52630600	Weak transcription	Colonic Mucosa	Colon
9	chr3:52613200-52634000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:52613400-52630600	Weak transcription	Spleen	Spleen
11	chr3:52613400-52635000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:52613400-52635000	Weak transcription	Fetal Brain Male	brain
13	chr3:52613600-52630600	Weak transcription	Gastric	stomach
14	chr3:52613600-52634600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:52613600-52635200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:52613600-52635200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:52613600-52635200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:52614200-52630600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:52614200-52634800	Weak transcription	Small Intestine	intestine
20	chr3:52615600-52630600	Weak transcription	Pancreas	Pancrea
21	chr3:52615800-52630600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:52617600-52630600	Weak transcription	NHLF	lung
23	chr3:52620600-52630600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:52620600-52631000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:52620600-52634800	Weak transcription	Aorta	Aorta
26	chr3:52620800-52630800	Weak transcription	Lung	lung
27	chr3:52620800-52634800	Weak transcription	Esophagus	oesophagus
28	chr3:52620800-52635000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr3:52620800-52635000	Weak transcription	NHEK	skin
30	chr3:52621000-52630800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr3:52621600-52630800	Weak transcription	HepG2	liver
32	chr3:52621600-52635800	Weak transcription	Hela-S3	cervix
33	chr3:52622200-52634200	Weak transcription	HUVEC	blood vessel
34	chr3:52622200-52635000	Weak transcription	Ovary	ovary
35	chr3:52623000-52635200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:52623200-52630400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr3:52623200-52634200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:52623200-52634200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr3:52623200-52634400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:52623200-52634800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:52623200-52635400	Weak transcription	HMEC	breast
42	chr3:52623400-52629000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:52623400-52629200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:52623400-52630400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:52623400-52630600	Weak transcription	Fetal Intestine Large	intestine
46	chr3:52623400-52630600	Weak transcription	Right Ventricle	heart
47	chr3:52623400-52630600	Weak transcription	GM12878-XiMat	blood
48	chr3:52623400-52630800	Weak transcription	Osteobl	bone
49	chr3:52623400-52631000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr3:52623400-52632600	Weak transcription	Primary B cells from peripheral blood	blood

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