Variant report

Variant	rs7639358
Chromosome Location	chr3:53218414-53218415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:53195327..53198099-chr3:53217923..53220079,2	K562	blood:
2	chr3:53196507..53199069-chr3:53217529..53219666,3	K562	blood:
3	chr3:53188739..53190772-chr3:53217990..53220678,2	MCF-7	breast:
4	chr3:53213790..53217370-chr3:53218232..53220509,3	K562	blood:
5	chr3:53215003..53217418-chr3:53218232..53220040,2	K562	blood:
6	chr3:53188671..53190959-chr3:53216137..53219877,3	MCF-7	breast:
7	chr3:53216154..53218748-chr3:53220268..53222992,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163932	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6798141	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834699	chr3:53151876-53325808	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv517233	chr3:53175557-53321002	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53197600-53227600	Weak transcription	Hela-S3	cervix
2	chr3:53200600-53229600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:53201600-53228000	Weak transcription	NH-A	brain
4	chr3:53202000-53228400	Weak transcription	Fetal Kidney	kidney
5	chr3:53202800-53229600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:53203200-53226800	Strong transcription	Fetal Stomach	stomach
7	chr3:53203600-53229800	Weak transcription	A549	lung
8	chr3:53205600-53229800	Weak transcription	Brain Angular Gyrus	brain
9	chr3:53206000-53219400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:53206600-53221400	Strong transcription	Fetal Intestine Small	intestine
11	chr3:53206800-53219400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:53206800-53228000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:53207200-53227400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:53207200-53227600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:53209200-53222800	Weak transcription	Brain Germinal Matrix	brain
16	chr3:53209600-53228000	Weak transcription	HUVEC	blood vessel
17	chr3:53209600-53228400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr3:53210000-53229000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:53210600-53228400	Strong transcription	Gastric	stomach
20	chr3:53211000-53227400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr3:53211400-53223000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:53211400-53227800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr3:53211600-53224800	Strong transcription	Rectal Smooth Muscle	rectum
24	chr3:53211800-53227800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:53212200-53221000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:53212200-53225200	Strong transcription	Right Ventricle	heart
27	chr3:53212200-53226200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:53212200-53226800	Strong transcription	Lung	lung
29	chr3:53212200-53227000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:53212400-53220800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:53212400-53221400	Strong transcription	NHLF	lung
32	chr3:53212400-53221600	Strong transcription	Fetal Intestine Large	intestine
33	chr3:53212400-53223400	Strong transcription	Fetal Thymus	thymus
34	chr3:53212400-53224600	Strong transcription	Thymus	Thymus
35	chr3:53212400-53225200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr3:53212400-53225400	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr3:53212400-53226200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:53212400-53226200	Strong transcription	Esophagus	oesophagus
39	chr3:53212400-53226800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:53212600-53220400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:53212600-53224200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:53212600-53224600	Strong transcription	Stomach Smooth Muscle	stomach
43	chr3:53212600-53226400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:53212600-53226400	Strong transcription	Ovary	ovary
45	chr3:53212800-53224000	Strong transcription	Pancreas	Pancrea
46	chr3:53212800-53226800	Strong transcription	HMEC	breast
47	chr3:53213000-53219800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:53213200-53222400	Weak transcription	Osteobl	bone
49	chr3:53213200-53225200	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr3:53213400-53221200	Strong transcription	Placenta Amnion	Placenta Amnion

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