Variant report

Variant	rs7639565
Chromosome Location	chr3:113277105-113277106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113276000..113278801-chr3:113288108..113290527,2	MCF-7	breast:
2	chr3:113269071..113270721-chr3:113276084..113277953,2	MCF-7	breast:
3	chr3:113274620..113277529-chr3:113285320..113288122,4	MCF-7	breast:
4	chr3:113219180..113221575-chr3:113276226..113279044,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11921816	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12489267	0.90[EUR][1000 genomes]
rs12629813	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12629879	0.85[AMR][1000 genomes]
rs12635148	0.82[AMR][1000 genomes]
rs13092681	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1567780	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2271494	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28674622	0.92[EUR][1000 genomes]
rs4682495	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6769767	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6787745	0.81[AMR][1000 genomes]
rs6799004	0.81[AMR][1000 genomes]
rs7611694	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613082	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9827928	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113255400-113278800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:113255600-113278400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:113256000-113279000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:113257200-113277400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:113257200-113283400	Weak transcription	Primary B cells from cord blood	blood
6	chr3:113262600-113278800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:113267400-113278400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:113268200-113279400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:113271000-113277600	Enhancers	HepG2	liver
10	chr3:113274000-113278200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr3:113274400-113278800	Weak transcription	Primary T cells from cord blood	blood
12	chr3:113276000-113277600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr3:113276000-113277600	Flanking Active TSS	A549	lung
14	chr3:113276200-113277600	Genic enhancers	GM12878-XiMat	blood
15	chr3:113276200-113278400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr3:113276200-113281400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr3:113276400-113278000	Enhancers	Stomach Mucosa	stomach
18	chr3:113276400-113281000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr3:113276600-113277600	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr3:113276600-113279000	Weak transcription	Spleen	Spleen
21	chr3:113276800-113278000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr3:113276800-113279200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:113276800-113279600	Weak transcription	HUVEC	blood vessel
24	chr3:113276800-113280800	Weak transcription	Gastric	stomach
25	chr3:113276800-113284800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:113276800-113294200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:113277000-113278600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:113277000-113278600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr3:113277000-113278800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr3:113277000-113279000	Weak transcription	HMEC	breast
31	chr3:113277000-113279800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:113277000-113280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:113277000-113280800	Weak transcription	NHEK	skin

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