Variant report

Variant	rs7639949
Chromosome Location	chr3:155991551-155991552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57481886	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155983400-155993000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:155990400-155991600	Enhancers	Fetal Muscle Leg	muscle
3	chr3:155990600-155991600	Enhancers	Colon Smooth Muscle	Colon
4	chr3:155990600-155991800	Enhancers	Brain Substantia Nigra	brain
5	chr3:155991000-155991600	Active TSS	Brain Cingulate Gyrus	brain
6	chr3:155991000-155991600	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr3:155991200-155991600	Active TSS	Brain Hippocampus Middle	brain
8	chr3:155991200-155991600	Active TSS	Stomach Smooth Muscle	stomach
9	chr3:155991400-155991600	Flanking Active TSS	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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