Variant report

Variant	rs7639983
Chromosome Location	chr3:84158052-84158053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10511091	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1609240	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141293	0.84[ASN][1000 genomes]
rs34843962	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs34867519	0.83[ASN][1000 genomes]
rs4856485	0.86[AFR][1000 genomes]
rs6548931	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6548934	0.84[ASN][1000 genomes]
rs6767775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778602	1.00[ASN][1000 genomes]
rs73121754	1.00[ASN][1000 genomes]
rs9868383	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1012918	chr3:83784488-84191829	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv536610	chr3:83784488-84191829	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv877075	chr3:83952144-84199075	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv877078	chr3:83991464-84199075	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1007008	chr3:84069044-84653896	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv536612	chr3:84069044-84653896	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv877081	chr3:84094818-84199075	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv460743	chr3:84094818-84644186	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv590814	chr3:84094818-84644186	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:84156400-84158200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:84156600-84158800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:84157000-84158200	Enhancers	Brain Substantia Nigra	brain
4	chr3:84157000-84158600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:84157000-84159000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:84157000-84159200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:84157000-84159400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:84157000-84159400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:84157200-84159600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:84157200-84159800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:84157200-84159800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:84157600-84158200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr3:84157600-84158200	Enhancers	HSMM	muscle
14	chr3:84157800-84158200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:84157800-84158200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:84157800-84158200	Active TSS	A549	lung
17	chr3:84157800-84158800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:84157800-84159000	Weak transcription	Brain Anterior Caudate	brain
19	chr3:84158000-84158200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:84158000-84158200	Enhancers	HMEC	breast
21	chr3:84158000-84158400	Enhancers	Brain Germinal Matrix	brain
22	chr3:84158000-84158800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:84158000-84158800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr3:84158000-84159000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:84158000-84159000	Weak transcription	Brain Angular Gyrus	brain
26	chr3:84158000-84159200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:84158000-84159200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr3:84158000-84159200	Enhancers	NH-A	brain
29	chr3:84158000-84160400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr3:84158000-84160400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:84158000-84160400	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links