Variant report

Variant	rs7640281
Chromosome Location	chr3:69392331-69392332
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11128125	0.96[ASN][1000 genomes]
rs1564758	0.96[ASN][1000 genomes]
rs1976064	0.91[ASN][1000 genomes]
rs2003264	0.90[ASN][1000 genomes]
rs2005546	0.90[ASN][1000 genomes]
rs2008239	0.91[ASN][1000 genomes]
rs34397489	0.96[ASN][1000 genomes]
rs6549200	0.93[ASN][1000 genomes]
rs6549204	0.95[ASN][1000 genomes]
rs6763080	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6774290	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6781841	0.95[ASN][1000 genomes]
rs6802833	0.96[ASN][1000 genomes]
rs6808107	0.91[ASN][1000 genomes]
rs7610748	0.95[ASN][1000 genomes]
rs7615137	0.91[ASN][1000 genomes]
rs9820308	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9820322	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9867072	0.94[ASN][1000 genomes]
rs9869925	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876410	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9882259	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv1800315	chr3:69374729-69414587	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69372200-69403800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:69378400-69400600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:69380600-69393200	Weak transcription	HSMM	muscle
4	chr3:69386000-69400200	Weak transcription	NHEK	skin
5	chr3:69387800-69393600	Enhancers	Brain Hippocampus Middle	brain
6	chr3:69389000-69400800	Weak transcription	Aorta	Aorta
7	chr3:69389400-69400600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:69389800-69400200	Weak transcription	HUVEC	blood vessel
9	chr3:69391200-69393000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:69391200-69394000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:69391200-69394600	Weak transcription	Thymus	Thymus
12	chr3:69391400-69392400	Weak transcription	Fetal Stomach	stomach
13	chr3:69391400-69393400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:69391600-69392400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:69391600-69393200	Weak transcription	Brain Anterior Caudate	brain
16	chr3:69391600-69394600	Weak transcription	Fetal Lung	lung
17	chr3:69391800-69392400	Weak transcription	Dnd41	blood
18	chr3:69391800-69393400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:69391800-69393400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:69392200-69392400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr3:69392200-69392400	Enhancers	Left Ventricle	heart
22	chr3:69392200-69392400	Enhancers	Lung	lung
23	chr3:69392200-69392400	Enhancers	Right Atrium	heart

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