Variant report

Variant	rs7640596
Chromosome Location	chr3:156115228-156115229
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1039257	1.00[AMR][1000 genomes]
rs13315734	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs58590195	0.89[ASN][1000 genomes]
rs6441068	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6796127	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs9847596	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156108200-156117000	Weak transcription	HSMMtube	muscle
2	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
3	chr3:156113400-156115600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:156113600-156115400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:156113600-156115400	Enhancers	Colon Smooth Muscle	Colon
6	chr3:156113600-156115800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:156114000-156115400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:156114000-156115800	Enhancers	NHDF-Ad	bronchial
9	chr3:156114600-156115600	Enhancers	Rectal Smooth Muscle	rectum
10	chr3:156115000-156115400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:156115200-156115400	Enhancers	Fetal Kidney	kidney
12	chr3:156115200-156115600	Enhancers	Fetal Brain Female	brain
13	chr3:156115200-156115600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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