Variant report

Variant	rs76406835
Chromosome Location	chr3:99684173-99684174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:99683884-99684263	MCF10A-Er-Src	breast:	n/a	chr3:99684063-99684071
2	CEBPB	chr3:99683854-99684216	IMR90	lung:	n/a	n/a
3	MAFK	chr3:99683930-99684241	HepG2	liver:	n/a	n/a
4	MYC	chr3:99683923-99684337	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr3:99683861-99684263	MCF10A-Er-Src	breast:	n/a	chr3:99684063-99684071
6	FOS	chr3:99683897-99684237	MCF10A-Er-Src	breast:	n/a	chr3:99684063-99684071
7	STAT3	chr3:99683903-99684212	MCF10A-Er-Src	breast:	n/a	n/a
8	MAFK	chr3:99683956-99684225	IMR90	lung:	n/a	n/a
9	STAT3	chr3:99683916-99684235	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr3:99683833-99684327	MCF10A-Er-Src	breast:	n/a	n/a
11	MYC	chr3:99683967-99684327	MCF10A-Er-Src	breast:	n/a	n/a
12	FOS	chr3:99683861-99684299	MCF10A-Er-Src	breast:	n/a	chr3:99684063-99684071

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99683941..99686099-chr3:99690442..99692720,2	MCF-7	breast:
2	chr3:99683725..99685720-chr3:99687425..99689237,2	MCF-7	breast:

Variant related genes	Relation type
MIR3921	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv869848	chr3:99652246-99904276	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv932634	chr3:99660690-99888854	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010579	chr3:99660754-99901817	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1008483	chr3:99660754-99903769	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010897	chr3:99660754-99904783	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1001529	chr3:99661758-99892654	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
9	nsv536665	chr3:99661758-99892654	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	esv3325883	chr3:99684162-99687960	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99657600-99686600	Weak transcription	Primary B cells from cord blood	blood
2	chr3:99671600-99684200	Weak transcription	NHEK	skin
3	chr3:99671600-99688200	Weak transcription	Primary T cells from cord blood	blood
4	chr3:99677400-99696600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:99677600-99684400	Weak transcription	Fetal Stomach	stomach
6	chr3:99677600-99684400	Weak transcription	Pancreas	Pancrea
7	chr3:99677600-99684600	Weak transcription	Lung	lung
8	chr3:99677600-99692600	Weak transcription	Fetal Lung	lung
9	chr3:99678800-99691800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr3:99679400-99684400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:99679600-99688200	Weak transcription	GM12878-XiMat	blood
12	chr3:99679600-99697000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:99680000-99684400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:99680200-99684200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:99680200-99684400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr3:99680600-99685600	Weak transcription	Adipose Nuclei	Adipose
17	chr3:99681000-99684800	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:99681000-99685800	Weak transcription	Fetal Heart	heart
19	chr3:99681200-99684200	Weak transcription	Ovary	ovary
20	chr3:99681200-99684200	Weak transcription	Small Intestine	intestine
21	chr3:99681200-99684800	Weak transcription	Right Atrium	heart
22	chr3:99681200-99685600	Weak transcription	Gastric	stomach
23	chr3:99682000-99684600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:99682000-99685000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr3:99682200-99684200	Weak transcription	HSMM	muscle
26	chr3:99682200-99684600	Weak transcription	Colon Smooth Muscle	Colon
27	chr3:99682400-99684200	Weak transcription	HSMMtube	muscle
28	chr3:99682400-99685600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr3:99683000-99684600	Enhancers	HepG2	liver
30	chr3:99683000-99687200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:99683200-99684400	Enhancers	Stomach Mucosa	stomach
32	chr3:99683200-99685000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr3:99683200-99685600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:99683200-99685600	Enhancers	Fetal Intestine Large	intestine
35	chr3:99683200-99685800	Enhancers	Left Ventricle	heart
36	chr3:99683200-99686000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:99683200-99686400	Enhancers	Fetal Intestine Small	intestine
38	chr3:99683400-99684400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:99683400-99684400	Weak transcription	Psoas Muscle	Psoas
40	chr3:99683400-99684600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:99683400-99684800	Enhancers	Osteobl	bone
42	chr3:99683400-99685000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:99683400-99685000	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr3:99683400-99685400	Enhancers	Aorta	Aorta
45	chr3:99683400-99685400	Enhancers	HMEC	breast
46	chr3:99683400-99687000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:99683400-99687200	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr3:99683600-99684400	Weak transcription	Right Ventricle	heart
49	chr3:99683600-99685000	Enhancers	Hela-S3	cervix
50	chr3:99683600-99685200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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