Variant report

Variant	rs7641003
Chromosome Location	chr3:159467058-159467059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10513540	1.00[AMR][1000 genomes]
rs58712677	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963569	chr3:159462963-159467316	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159450800-159480600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:159451800-159470200	Weak transcription	NHEK	skin
3	chr3:159451800-159473200	Weak transcription	Aorta	Aorta
4	chr3:159451800-159478800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:159452400-159468200	Weak transcription	HSMM	muscle
6	chr3:159458200-159472400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:159464600-159478800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:159464800-159467200	Weak transcription	Left Ventricle	heart
9	chr3:159466000-159468400	Enhancers	Liver	Liver
10	chr3:159466200-159467400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:159466200-159467600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:159466400-159467200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:159466400-159467400	Enhancers	Fetal Intestine Large	intestine
14	chr3:159466400-159468400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:159466400-159468400	Weak transcription	NH-A	brain
16	chr3:159466400-159469000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:159466400-159478000	Weak transcription	HMEC	breast
18	chr3:159466600-159470800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:159466800-159468400	Weak transcription	Osteobl	bone
20	chr3:159467000-159467200	Enhancers	Lung	lung
21	chr3:159467000-159467600	Flanking Active TSS	A549	lung
22	chr3:159467000-159467600	Enhancers	HepG2	liver
23	chr3:159467000-159467800	Enhancers	Fetal Intestine Small	intestine
24	chr3:159467000-159467800	Enhancers	Fetal Kidney	kidney
25	chr3:159467000-159468200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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