Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10865953	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs14018	0.85[EUR][1000 genomes]
rs4858799	0.96[EUR][1000 genomes]
rs4858800	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4858830	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6442129	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6442131	0.85[EUR][1000 genomes]
rs6766238	0.85[EUR][1000 genomes]
rs6796790	0.88[EUR][1000 genomes]
rs6801211	0.88[EUR][1000 genomes]
rs6806356	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7429596	0.80[EUR][1000 genomes]
rs7610519	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7639370	0.81[EUR][1000 genomes]
rs9311431	0.81[EUR][1000 genomes]
rs9848268	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9859473	0.81[EUR][1000 genomes]
rs9873227	0.88[EUR][1000 genomes]
rs9879978	0.81[EUR][1000 genomes]
rs9882443	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590247	chr3:48661985-48801929	Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7641050	ARIH2	Cis_1M	lymphoblastoid	RTeQTL
rs7641050	PH-4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48760600-48765000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:48761600-48764000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr3:48761600-48764200	Weak transcription	Colonic Mucosa	Colon
4	chr3:48762000-48763800	Weak transcription	Stomach Mucosa	stomach
5	chr3:48762200-48763600	Weak transcription	Rectal Mucosa Donor 31	rectum

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